diff --git a/LifeSciences/RepeatMasker-4.1.2/RepeatMasker-4.1.2.sh b/LifeSciences/RepeatMasker-4.1.2/RepeatMasker-4.1.2.sh index b0f58972b8aa6efb8441945280702ba2588b4427..60d8617c18116f2a2c2bb133c74fd9d990d09e85 100644 --- a/LifeSciences/RepeatMasker-4.1.2/RepeatMasker-4.1.2.sh +++ b/LifeSciences/RepeatMasker-4.1.2/RepeatMasker-4.1.2.sh @@ -2,7 +2,7 @@ if [[ $# -ne 2 ]]; then echo "The format is as follows:" - echo "bash wrf-4.2.sh buildpath installpath" + echo "bash RepeatMasker-4.1.2.sh buildpath installpath" echo ":param buildpath: 应用构建绝对路径" echo ":param installpath: 应用安装绝对路径" exit 1 diff --git a/LifeSciences/RepeatMasker-4.1.2/build.sh b/LifeSciences/RepeatMasker-4.1.2/build.sh index 78f9f6307a5220affe34a4be939733e56fe2f760..cf474fdf63ee121a2f3482f830ced4fce4f03dbe 100644 --- a/LifeSciences/RepeatMasker-4.1.2/build.sh +++ b/LifeSciences/RepeatMasker-4.1.2/build.sh @@ -41,15 +41,16 @@ module load $installpath/trf-4.09.1/trf_modulefiles bash RepeatMasker-4.1.2.sh $buildpath $installpath -mkdir -p pkg/RepeatMasker-4.1.2 && cp -r $installpath/* pkg/RepeatMasker-4.1.2/ -cat>"pkg/RepeatMasker-4.1.2/run.sh"<"pkg/RepeatMasker-4.1.2-hpc/run.sh"< /dev/null current_dir=\$(cd "\$(dirname "\${BASH_SOURCE[0]}")" &> /dev/null && pwd) for d in \$(ls \$current_dir) do - [[ ! \$d =~ "RepeatMasker" && ! -f "\$current_dir/\$d" ]] && cd \$current_dir/\$d && module use \$(pwd) && module load \$(pwd)/*modulefiles + [[ ! -f "\$current_dir/\$d" ]] && cd \$current_dir/\$d && module use \$(pwd) && module load \$(pwd)/*modulefiles done cd \$current_dir/RepeatMasker-4.1.2-p1 perl ./configure -libdir \$current_dir/RepeatMasker-4.1.2-p1/Libraries \ @@ -58,7 +59,7 @@ perl ./configure -libdir \$current_dir/RepeatMasker-4.1.2-p1/Libraries \ -default_search_engine rmblast cd \$current_dir EOF -cd pkg/ && tar zcvf RepeatMasker-4.1.2.tar.gz RepeatMasker-4.1.2 +cd pkg/ && tar zcvf RepeatMasker-4.1.2-hpc.tar.gz RepeatMasker-4.1.2-hpc rm -rf $buildpath $installpath diff --git a/LifeSciences/RepeatMasker-4.1.2/dependency/rmblast-2.13.0.sh b/LifeSciences/RepeatMasker-4.1.2/dependency/rmblast-2.13.0.sh index 3c05753c8953eece4525c69fdfb4b2017413431a..57d08c584e31e23ad27fa3c05e8f8ccbd3de3310 100644 --- a/LifeSciences/RepeatMasker-4.1.2/dependency/rmblast-2.13.0.sh +++ b/LifeSciences/RepeatMasker-4.1.2/dependency/rmblast-2.13.0.sh @@ -2,7 +2,7 @@ if [[ $# -ne 2 ]]; then echo "The format is as follows:" - echo "bash rmblast.sh buildpath installpath" + echo "bash rmblast-2.13.0.sh buildpath installpath" echo ":param buildpath: 应用构建绝对路径" echo ":param installpath: 应用安装绝对路径" exit 1 diff --git a/LifeSciences/RepeatMasker-4.1.2/dependency/trf-4.09.1.sh b/LifeSciences/RepeatMasker-4.1.2/dependency/trf-4.09.1.sh index 774aa8de7ba02806c0a0ba84bd820b94482645b0..284b01af4c1c128f63a6f44e446ef2b430f27a64 100644 --- a/LifeSciences/RepeatMasker-4.1.2/dependency/trf-4.09.1.sh +++ b/LifeSciences/RepeatMasker-4.1.2/dependency/trf-4.09.1.sh @@ -2,7 +2,7 @@ if [[ $# -ne 2 ]]; then echo "The format is as follows:" - echo "bash trf.sh buildpath installpath" + echo "bash trf-4.09.1.sh buildpath installpath" echo ":param buildpath: 应用构建绝对路径" echo ":param installpath: 应用安装绝对路径" exit 1 diff --git "a/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker-4.1.2 Devkit\350\277\201\347\247\273\344\270\216\350\260\203\344\274\230\346\212\245\345\221\212.docx" "b/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker-4.1.2 Devkit\350\277\201\347\247\273\344\270\216\350\260\203\344\274\230\346\212\245\345\221\212.docx" new file mode 100644 index 0000000000000000000000000000000000000000..9d6a85372948785c543dd2214e2da63aa33f7c4e Binary files /dev/null and "b/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker-4.1.2 Devkit\350\277\201\347\247\273\344\270\216\350\260\203\344\274\230\346\212\245\345\221\212.docx" differ diff --git "a/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker_test-process_20220722_170949-2.5.RC1.tar" "b/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker_test-process_20220722_170949-2.5.RC1.tar" new file mode 100644 index 0000000000000000000000000000000000000000..3c5536999a0bbd6c6f6f69195216b21ce56e02e7 Binary files /dev/null and "b/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker_test-process_20220722_170949-2.5.RC1.tar" differ diff --git "a/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker\346\272\220\347\240\201\350\277\201\347\247\273.html" "b/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker\346\272\220\347\240\201\350\277\201\347\247\273.html" new file mode 100644 index 0000000000000000000000000000000000000000..4f81670a970b0aac1a67b6f1ef58a53ea0d75ecd --- /dev/null +++ "b/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker\346\272\220\347\240\201\350\277\201\347\247\273.html" @@ -0,0 +1,506 @@ + + + + + + + + Document + + + + + +
+

+ 2022/07/14 12:41:03 +

+
+ +

配置信息

+ +
+
+ 源码文件存放路径 + + /home/poradv/portadv/portadmin/sourcecode/RepeatMasker + +
+
+ 目标操作系统 + + openEuler 20.03 SP3 + +
+
+ 目标系统内核版本 + + 4.19.90 + +
+
+ 编译器版本 + + -- + +
+
+ 构建工具 + + -- + +
+
+ 编译命令 + + -- + +
+
+ 迁移结果 + + + + 源码迁移分析成功:您指定的分析路径/分析包中没有需要迁移的内容 + +
+
+ +
+
+
+

可兼容替换

+

0

+
+
+

待验证替换

+

0

+
+
+

依赖文件总数

+

0

+
+
+
+
+

源文件数

+

0

+
+
+

代码行数

+

0

+
+
+

源码迁移人力

+

0人月

+
+
+

+ 预估标准:1人月迁移工作量 = 500行 C/C++/Fortran/Go/构建文件等源码,或250行汇编代码 +

+
+
+
+ +
+
+ 与架构相关的依赖文件 +
+ +
+ +
+
+ + + + + + + + + + + +
序号依赖文件名文件类型 + 待下载软件包名称 + 分析结果处理建议
+
+
+ + + + + + + + + + + + + + + +
+
+
+ 未发现与架构相关的依赖文件 +
+
+
+
+ + +
+
+ 需要迁移的源码文件 +
+ +
+ +
+
+ + + + + + + + + + + +
序号文件名路径文件类型需修改的代码行
+
+
+ + + + + + + + + + + + + + +
+
+
+ 未发现需要迁移的源码文件 +
+
+
+
+ + +
+
+ 需要迁移的代码行数 +
+ +
+ +
+
+ + + + + + + + + +
文件名行号(起始行,结束行)关键字建议
+
+
+ + + + + + + + + + + + + +
+
+
+ 无数据 +
+
+
+
+ + +
+
+ + + + + + \ No newline at end of file diff --git "a/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker\350\275\257\344\273\266\350\277\201\347\247\273\350\257\204\344\274\260.html" "b/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker\350\275\257\344\273\266\350\277\201\347\247\273\350\257\204\344\274\260.html" new file mode 100644 index 0000000000000000000000000000000000000000..d739e96381a0c7e19f2d43d470bc3b798ec06e99 --- /dev/null +++ "b/LifeSciences/RepeatMasker-4.1.2/doc/Devkit\346\212\245\345\221\212/RepeatMasker\350\275\257\344\273\266\350\277\201\347\247\273\350\257\204\344\274\260.html" @@ -0,0 +1,499 @@ + + + + + + + + Document + + + +
+

+ 2022/07/14 12:46:44

+
+ +

+ 配置信息

+
+
+ 软件安装包存放路径或软件包名称 + /home/poradv/portadv/portadmin/package/RepeatMasker-4.1.2-p1.tar.gz +
+ +
+ 目标操作系统 + openEuler 20.03 SP2 +
+
+ 目标系统内核版本 +

+ 4.19.90 +

+
+ +
+ 评估结果 +

+ + 软件迁移评估成功:您指定的分析路径/分析包中没有需要评估的内容 +

+
+ +
+
+ +
+

可兼容替换

+

0

+
+ +
+

待验证替换

+

0

+
+ +
+

依赖文件总数

+

0

+
+ +
+ +
+
+ +
+
+ 与架构相关的依赖文件 +
+
+ +
+
+ + + + + + + + + + + + + + +
序号依赖文件名文件类型软件包存放路径待下载软件包名称分析结果处理建议
+
+
+ + + + + + + + + + + + + + + + + + + +
+
+
+ 未发现与架构相关的依赖文件
+
+
+
+ + +
+
+ + + + \ No newline at end of file