diff --git a/LifeSciences/nanopack-1.1.0/build.sh b/LifeSciences/nanopack-1.1.0/build.sh index 72c7490df3974b8e70de8871bc120e5f92f54bec..10086a8351aad9a46d92cbcb54cd9a5bf91a6b38 100644 --- a/LifeSciences/nanopack-1.1.0/build.sh +++ b/LifeSciences/nanopack-1.1.0/build.sh @@ -48,29 +48,8 @@ for d in \$(ls \$current_dir) do [[ ! \$d =~ "nanopack" && ! -f "\$current_dir/\$d" ]] && cd \$current_dir/\$d && module use \$(pwd) && module load \$(pwd)/*modulefiles done -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/2to3 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/easy_install-3.8 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/f2py3.8 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/minimap2.py -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/NanoLyse -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/NanoStat -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/pip3.10 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/pydoc3 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/2to3-3.8 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/f2py -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/idle3 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/NanoComp -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/NanoPlot -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/pip -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/pip3.8 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/pydoc3.8 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/bokeh -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/f2py3 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/idle3.8 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/NanoFilt -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/nanoQC -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/pip3 -sed -i 's|#!'$installpath'/python3/bin/python3.8|#!'$(pwd)'/pkg/nanopack-1.1.0-hpc/python3/bin/python3.8|g' $(pwd)/pkg/nanopack-1.1.0-hpc/python3/bin/plasma_store +cd \$current_dir +[[ ! -d "$installpath/python3" ]] && mkdir -p $installpath/python3 && cp -r \$current_dir/python3/* $installpath/python3/ EOF cd pkg/ && tar zcvf nanopack-1.1.0-hpc.tar.gz nanopack-1.1.0-hpc