diff --git "a/LifeSciences/featureCounts-2.0.3/doc/DevKit\346\212\245\345\221\212/featureCounts-2.0.3 DevKit\350\277\201\347\247\273\344\270\216\350\260\203\344\274\230\346\212\245\345\221\212.docx" "b/LifeSciences/featureCounts-2.0.3/doc/DevKit\346\212\245\345\221\212/featureCounts-2.0.3 DevKit\350\277\201\347\247\273\344\270\216\350\260\203\344\274\230\346\212\245\345\221\212.docx" index 630136ed609c074907e63c120d87d2601cba53b8..3ba6104b42c9bef49db2a82837db38b9848883e7 100644 Binary files "a/LifeSciences/featureCounts-2.0.3/doc/DevKit\346\212\245\345\221\212/featureCounts-2.0.3 DevKit\350\277\201\347\247\273\344\270\216\350\260\203\344\274\230\346\212\245\345\221\212.docx" and "b/LifeSciences/featureCounts-2.0.3/doc/DevKit\346\212\245\345\221\212/featureCounts-2.0.3 DevKit\350\277\201\347\247\273\344\270\216\350\260\203\344\274\230\346\212\245\345\221\212.docx" differ diff --git "a/LifeSciences/featureCounts-2.0.3/doc/featureCounts-2.0.3\345\272\224\347\224\250\347\247\273\346\244\215\346\214\207\345\215\227.docx" "b/LifeSciences/featureCounts-2.0.3/doc/featureCounts-2.0.3\345\272\224\347\224\250\347\247\273\346\244\215\346\214\207\345\215\227.docx" index 28e18d5ae94a1fdfece03bec1d4a76788e0fb64a..449bd1f746c78f0cf0b04d4f8c44de3780c8ebab 100644 Binary files "a/LifeSciences/featureCounts-2.0.3/doc/featureCounts-2.0.3\345\272\224\347\224\250\347\247\273\346\244\215\346\214\207\345\215\227.docx" and "b/LifeSciences/featureCounts-2.0.3/doc/featureCounts-2.0.3\345\272\224\347\224\250\347\247\273\346\244\215\346\214\207\345\215\227.docx" differ diff --git a/LifeSciences/featureCounts-2.0.3/featureCounts-2.0.3.sh b/LifeSciences/featureCounts-2.0.3/featureCounts-2.0.3.sh index 88cbab00b3449eda611b862d6bd2ee8d0f69734e..f3f3eeed13cd0760b4dd8e5246f7d05841176f07 100644 --- a/LifeSciences/featureCounts-2.0.3/featureCounts-2.0.3.sh +++ b/LifeSciences/featureCounts-2.0.3/featureCounts-2.0.3.sh @@ -21,11 +21,11 @@ if [[ "$buildpath" = "$installpath" ]]; then fi set -e -yum install -y wget zlib +yum install -y wget zlib zlib-devel wget -t 0 -c -P $buildpath https://nchc.dl.sourceforge.net/project/subread/subread-2.0.3/subread-2.0.3-source.tar.gz tar -xvf $buildpath/subread-2.0.3-source.tar.gz -C $buildpath && rm -rf $buildpath/subread-2.0.3-source.tar.gz cd $buildpath/subread-2.0.3-source/src/ -sed -i -e 's/CC_EXEC = gcc/CC_EXEC = clang/g' -e 's/-mtune=core2/-mtune=native/g' Makefile.Linux +sed -i -e 's/CC_EXEC = gcc/CC_EXEC = clang/g' -e 's/-mtune=core2/-mtune=tsv110/g' Makefile.Linux make featureCounts -f Makefile.Linux mkdir -p $installpath/subread/bin && cp -p featureCounts $installpath/subread/bin/ mkdir -p $installpath/subread/test/featureCounts && cp -rp ../test/featureCounts/* $installpath/subread/test/featureCounts/