diff --git a/test/test-gatk.sh b/test/test-gatk.sh
new file mode 100644
index 0000000000000000000000000000000000000000..eb12d8acb06ec4ddd1c5d5a4289a23a89f01d4f2
--- /dev/null
+++ b/test/test-gatk.sh
@@ -0,0 +1,16 @@
+#!/bin/bash
+cd ..
+# release gatk src code
+rm -rf tmp/gatk-4.0.0.0
+# copy templates
+cp -rf templates/gatk/4.0.0.0/data.gatk.arm.cpu.config ./
+# switch to config
+./jarvis -use data.gatk.arm.cpu.config
+# download gatk src code
+./jarvis -d
+# install dependency
+./jarvis -dp
+# build
+./jarvis -b
+# run
+./jarvis -r
\ No newline at end of file