From b17e6f5c8b55dc6d3657aa56627be067ebedb0eb Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 4 Jul 2024 20:11:52 +0800
Subject: [PATCH 01/34] add amg

---
 package/amg/1.2/install.sh | 12 ++++++++++++
 1 file changed, 12 insertions(+)
 create mode 100755 package/amg/1.2/install.sh

diff --git a/package/amg/1.2/install.sh b/package/amg/1.2/install.sh
new file mode 100755
index 0000000..bc13d94
--- /dev/null
+++ b/package/amg/1.2/install.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+set -x
+set -e
+amg_ver='1.2'
+. ${DOWNLOAD_TOOL} -u https://github.com/LLNL/AMG/archive/refs/tags/${amg_ver}.zip
+cd ${JARVIS_ROOT}
+rm -rf AMG-${amg_ver}
+unzip ${JARVIS_DOWNLOAD}/${amg_ver}.zip
+cd AMG-${amg_ver} 
+make -j
+mkdir $1/bin -p
+cp ./test/* $1/bin
-- 
Gitee


From 54b9bd5ae2c6fbce534ace1452088ba96dff8a1b Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 11 Jul 2024 15:38:11 +0800
Subject: [PATCH 02/34] add templates/amg/1.2/data.amg.arm.cpu.config

---
 templates/amg/1.2/data.amg.arm.cpu.config | 48 +++++++++++++++++++++++
 1 file changed, 48 insertions(+)
 create mode 100644 templates/amg/1.2/data.amg.arm.cpu.config

diff --git a/templates/amg/1.2/data.amg.arm.cpu.config b/templates/amg/1.2/data.amg.arm.cpu.config
new file mode 100644
index 0000000..217bc97
--- /dev/null
+++ b/templates/amg/1.2/data.amg.arm.cpu.config
@@ -0,0 +1,48 @@
+[SERVER]
+11.11.11.11
+
+[DOWNLOAD]
+amg/1.2  https://github.com/LLNL/AMG/archive/refs/tags/1.2.zip
+
+
+[DEPENDENCY]
+export CC=mpicc CXX=mpicxx FC=mpifort
+
+
+[ENV]
+module use /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0
+module add amg/1.2
+
+
+[APP]
+app_name = amg
+build_dir = ${JARVIS_ROOT}
+binary_dir = ${JARVIS_ROOT}/
+case_dir =
+
+[BUILD]
+cd ${JARVIS_ROOT}
+rm -rf AMG-1.2
+tar -xvf ${JARVIS_DOWNLOAD}/1.2.zip
+cd AMG-1.2
+make -j
+
+mkdir /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin -p
+cp ./test/* /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin
+ 
+cd ${JARVIS_ROOT}
+rm -rf AMG-1.2
+mkdir /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0/amg -p
+cat >> /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0/amg/1.2 << EOF
+#%Module1.0
+set prefix /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2
+set version 1.2
+setenv AMG_PATH \$prefix
+prepend-path PATH \$prefix/bin
+EOF
+
+
+[RUN]
+run =  
+binary =
+nodes = 1
-- 
Gitee


From c23db8f5489f8e26ccaeb383ada403e455139b58 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 11 Jul 2024 16:28:50 +0800
Subject: [PATCH 03/34] add templates/amg/1.2/data.amg.arm.cpu.config

---
 templates/amg/1.2/data.amg.arm.cpu.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/templates/amg/1.2/data.amg.arm.cpu.config b/templates/amg/1.2/data.amg.arm.cpu.config
index 217bc97..7a34609 100644
--- a/templates/amg/1.2/data.amg.arm.cpu.config
+++ b/templates/amg/1.2/data.amg.arm.cpu.config
@@ -23,7 +23,7 @@ case_dir =
 [BUILD]
 cd ${JARVIS_ROOT}
 rm -rf AMG-1.2
-tar -xvf ${JARVIS_DOWNLOAD}/1.2.zip
+unzip ${JARVIS_DOWNLOAD}/1.2.zip
 cd AMG-1.2
 make -j
 
-- 
Gitee


From 278e893e18c1361b6a5b0d87031a234814657b7d Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 11 Jul 2024 16:34:49 +0800
Subject: [PATCH 04/34] add templates/amg/1.2/data.amg.arm.cpu.config

---
 templates/amg/1.2/data.amg.arm.cpu.config | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/templates/amg/1.2/data.amg.arm.cpu.config b/templates/amg/1.2/data.amg.arm.cpu.config
index 7a34609..e91135f 100644
--- a/templates/amg/1.2/data.amg.arm.cpu.config
+++ b/templates/amg/1.2/data.amg.arm.cpu.config
@@ -17,12 +17,11 @@ module add amg/1.2
 [APP]
 app_name = amg
 build_dir = ${JARVIS_ROOT}
-binary_dir = ${JARVIS_ROOT}/
+binary_dir = ${JARVIS_ROOT}/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin
 case_dir =
 
 [BUILD]
 cd ${JARVIS_ROOT}
-rm -rf AMG-1.2
 unzip ${JARVIS_DOWNLOAD}/1.2.zip
 cd AMG-1.2
 make -j
@@ -30,8 +29,6 @@ make -j
 mkdir /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin -p
 cp ./test/* /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin
  
-cd ${JARVIS_ROOT}
-rm -rf AMG-1.2
 mkdir /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0/amg -p
 cat >> /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0/amg/1.2 << EOF
 #%Module1.0
-- 
Gitee


From a54f0bc55fe9fde0faeccba7a6b66ff1883ed5bc Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 11 Jul 2024 16:53:54 +0800
Subject: [PATCH 05/34] add templates/amg/1.2/data.amg.arm.cpu.config

---
 templates/amg/1.2/data.amg.arm.cpu.config | 11 ++++++++---
 1 file changed, 8 insertions(+), 3 deletions(-)

diff --git a/templates/amg/1.2/data.amg.arm.cpu.config b/templates/amg/1.2/data.amg.arm.cpu.config
index e91135f..92ad283 100644
--- a/templates/amg/1.2/data.amg.arm.cpu.config
+++ b/templates/amg/1.2/data.amg.arm.cpu.config
@@ -10,8 +10,7 @@ export CC=mpicc CXX=mpicxx FC=mpifort
 
 
 [ENV]
-module use /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0
-module add amg/1.2
+export CC=mpicc CXX=mpicxx FC=mpifort
 
 
 [APP]
@@ -21,7 +20,7 @@ binary_dir = ${JARVIS_ROOT}/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin
 case_dir =
 
 [BUILD]
-cd ${JARVIS_ROOT}
+ls ${JARVIS_DOWNLOAD}/
 unzip ${JARVIS_DOWNLOAD}/1.2.zip
 cd AMG-1.2
 make -j
@@ -38,6 +37,12 @@ setenv AMG_PATH \$prefix
 prepend-path PATH \$prefix/bin
 EOF
 
+cat >> /hpcrunner/env.sh << EOF
+module use /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0
+module add amg/1.2
+
+EOF
+
 
 [RUN]
 run =  
-- 
Gitee


From 1c29b606f6f5e4407de1c1e5a7640abcee616802 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 11 Jul 2024 16:56:29 +0800
Subject: [PATCH 06/34] add templates/amg/1.2/data.amg.arm.cpu.config

---
 templates/amg/1.2/data.amg.arm.cpu.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/templates/amg/1.2/data.amg.arm.cpu.config b/templates/amg/1.2/data.amg.arm.cpu.config
index 92ad283..c5da460 100644
--- a/templates/amg/1.2/data.amg.arm.cpu.config
+++ b/templates/amg/1.2/data.amg.arm.cpu.config
@@ -2,7 +2,7 @@
 11.11.11.11
 
 [DOWNLOAD]
-amg/1.2  https://github.com/LLNL/AMG/archive/refs/tags/1.2.zip
+amg/1.2  https://github.com/LLNL/AMG/archive/refs/tags/1.2.zip 1.2.zip
 
 
 [DEPENDENCY]
-- 
Gitee


From 10a5d4ac7502334db093e82f32dd9a0fd8789823 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 11 Jul 2024 17:02:00 +0800
Subject: [PATCH 07/34] add templates/amg/1.2/data.amg.arm.cpu.config

---
 templates/amg/1.2/data.amg.arm.cpu.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/templates/amg/1.2/data.amg.arm.cpu.config b/templates/amg/1.2/data.amg.arm.cpu.config
index c5da460..a0d129b 100644
--- a/templates/amg/1.2/data.amg.arm.cpu.config
+++ b/templates/amg/1.2/data.amg.arm.cpu.config
@@ -2,7 +2,7 @@
 11.11.11.11
 
 [DOWNLOAD]
-amg/1.2  https://github.com/LLNL/AMG/archive/refs/tags/1.2.zip 1.2.zip
+amg/1.2 https://github.com/LLNL/AMG/archive/refs/tags/1.2.zip 1.2.zip
 
 
 [DEPENDENCY]
-- 
Gitee


From 2a008d04ec8ee29162bb6bc76c0fb13d2dd69326 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 11 Jul 2024 19:53:43 +0800
Subject: [PATCH 08/34] add templates/amg/1.2/data.amg-sve.arm.cpu.config

---
 templates/amg/1.2/data.amg-sve.arm.cpu.config | 51 +++++++++++++++++++
 1 file changed, 51 insertions(+)
 create mode 100644 templates/amg/1.2/data.amg-sve.arm.cpu.config

diff --git a/templates/amg/1.2/data.amg-sve.arm.cpu.config b/templates/amg/1.2/data.amg-sve.arm.cpu.config
new file mode 100644
index 0000000..c4dfc4f
--- /dev/null
+++ b/templates/amg/1.2/data.amg-sve.arm.cpu.config
@@ -0,0 +1,51 @@
+[SERVER]
+11.11.11.11
+
+[DOWNLOAD]
+amg/1.2 https://github.com/LLNL/AMG/archive/refs/tags/1.2.zip 1.2.zip
+
+
+[DEPENDENCY]
+export CC=mpicc CXX=mpicxx FC=mpifort
+
+
+[ENV]
+export CC=mpicc CXX=mpicxx FC=mpifort
+
+
+[APP]
+app_name = amg
+build_dir = ${JARVIS_ROOT}
+binary_dir = ${JARVIS_ROOT}/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin
+case_dir =
+
+[BUILD]
+ls ${JARVIS_DOWNLOAD}/
+unzip ${JARVIS_DOWNLOAD}/1.2.zip
+cd AMG-1.2
+sed -i "46c INCLUDE_CFLAGS = -O2 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
+make -j
+
+mkdir /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin -p
+cp ./test/* /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin
+ 
+mkdir /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0/amg -p
+cat >> /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0/amg/1.2 << EOF
+#%Module1.0
+set prefix /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2
+set version 1.2
+setenv AMG_PATH \$prefix
+prepend-path PATH \$prefix/bin
+EOF
+
+cat >> /hpcrunner/env.sh << EOF
+module use /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0
+module add amg/1.2
+
+EOF
+
+
+[RUN]
+run =  
+binary =
+nodes = 1
-- 
Gitee


From 2198b9549e79c736bb20ac91870e341347e0c562 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 11 Jul 2024 20:01:10 +0800
Subject: [PATCH 09/34] add templates/amg/1.2/

---
 templates/amg/1.2/data.amg-sve.arm.cpu.config | 7 ++-----
 templates/amg/1.2/data.amg.arm.cpu.config     | 7 ++-----
 2 files changed, 4 insertions(+), 10 deletions(-)

diff --git a/templates/amg/1.2/data.amg-sve.arm.cpu.config b/templates/amg/1.2/data.amg-sve.arm.cpu.config
index c4dfc4f..652c745 100644
--- a/templates/amg/1.2/data.amg-sve.arm.cpu.config
+++ b/templates/amg/1.2/data.amg-sve.arm.cpu.config
@@ -11,6 +11,8 @@ export CC=mpicc CXX=mpicxx FC=mpifort
 
 [ENV]
 export CC=mpicc CXX=mpicxx FC=mpifort
+module use /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0
+module add amg/1.2
 
 
 [APP]
@@ -38,11 +40,6 @@ setenv AMG_PATH \$prefix
 prepend-path PATH \$prefix/bin
 EOF
 
-cat >> /hpcrunner/env.sh << EOF
-module use /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0
-module add amg/1.2
-
-EOF
 
 
 [RUN]
diff --git a/templates/amg/1.2/data.amg.arm.cpu.config b/templates/amg/1.2/data.amg.arm.cpu.config
index a0d129b..749c62e 100644
--- a/templates/amg/1.2/data.amg.arm.cpu.config
+++ b/templates/amg/1.2/data.amg.arm.cpu.config
@@ -11,6 +11,8 @@ export CC=mpicc CXX=mpicxx FC=mpifort
 
 [ENV]
 export CC=mpicc CXX=mpicxx FC=mpifort
+module use /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0
+module add amg/1.2
 
 
 [APP]
@@ -37,11 +39,6 @@ setenv AMG_PATH \$prefix
 prepend-path PATH \$prefix/bin
 EOF
 
-cat >> /hpcrunner/env.sh << EOF
-module use /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0
-module add amg/1.2
-
-EOF
 
 
 [RUN]
-- 
Gitee


From 2baddf29d311716a80ff191c3b4f8147ef8c576c Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 11 Jul 2024 20:31:57 +0800
Subject: [PATCH 10/34] add package/amg/1.2/install.sh

---
 package/amg/1.2/install.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/package/amg/1.2/install.sh b/package/amg/1.2/install.sh
index bc13d94..1cd48f9 100755
--- a/package/amg/1.2/install.sh
+++ b/package/amg/1.2/install.sh
@@ -7,6 +7,7 @@ cd ${JARVIS_ROOT}
 rm -rf AMG-${amg_ver}
 unzip ${JARVIS_DOWNLOAD}/${amg_ver}.zip
 cd AMG-${amg_ver} 
+sed -i "46c INCLUDE_CFLAGS = -O2 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
 make -j
 mkdir $1/bin -p
 cp ./test/* $1/bin
-- 
Gitee


From a9d4a3e52bc33afd2bd4988765441f9c12cac860 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Wed, 17 Jul 2024 14:30:29 +0800
Subject: [PATCH 11/34] add package/hdf5/1.10.7/

---
 package/hdf5/1.10.7/clang/install.sh | 13 +++++++++++++
 package/hdf5/1.10.7/install.sh       | 13 +++++++++++++
 2 files changed, 26 insertions(+)
 create mode 100755 package/hdf5/1.10.7/clang/install.sh
 create mode 100755 package/hdf5/1.10.7/install.sh

diff --git a/package/hdf5/1.10.7/clang/install.sh b/package/hdf5/1.10.7/clang/install.sh
new file mode 100755
index 0000000..ef69446
--- /dev/null
+++ b/package/hdf5/1.10.7/clang/install.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+set -x
+set -e
+. ${DOWNLOAD_TOOL} -u https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7.tar.gz
+cd ${JARVIS_TMP}
+rm -rf hdf5-1.10.7
+tar -xvf ${JARVIS_DOWNLOAD}/hdf5-1.10.7.tar.gz
+cd hdf5-1.10.7
+export CC=mpicc CXX=mpicxx FC=mpif90 F77=mpif90
+./configure --prefix=$1 --enable-fortran --enable-static=yes --enable-parallel --enable-shared CFLAGS="-O3 -fPIC -Wno-incompatible-pointer-types-discards-qualifiers -Wno-non-literal-null-conversion" FCFLAGS="-O3 -fPIC" LDFLAGS="-Wl,--build-id"
+sed -i '11835c wl="-Wl,"' libtool
+make -j
+make install
diff --git a/package/hdf5/1.10.7/install.sh b/package/hdf5/1.10.7/install.sh
new file mode 100755
index 0000000..1b8ec68
--- /dev/null
+++ b/package/hdf5/1.10.7/install.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+set -x
+set -e
+. ${DOWNLOAD_TOOL} -u https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7.tar.gz
+cd ${JARVIS_TMP}
+rm -rf hdf5-1.10.7
+tar -xvf ${JARVIS_DOWNLOAD}/hdf5-1.10.7.tar.gz
+cd hdf5-1.10.7
+#CC=mpicc CXX=mpicxx FC=mpifort F77=mpifort -Wno-incompatible-pointer-types-discards-qualifiers
+./configure --prefix=$1  --enable-fortran --enable-static=yes --enable-parallel --enable-shared
+sed -i '11835c wl="-Wl,"' libtool
+make -j
+make install
-- 
Gitee


From 147afdb243f49e1d8fa4a77f9c02e859593aad85 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 11:36:44 +0800
Subject: [PATCH 12/34] fix package/amg/1.2/install.sh

---
 package/amg/1.2/install.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/package/amg/1.2/install.sh b/package/amg/1.2/install.sh
index 1cd48f9..c50bc38 100755
--- a/package/amg/1.2/install.sh
+++ b/package/amg/1.2/install.sh
@@ -7,7 +7,7 @@ cd ${JARVIS_ROOT}
 rm -rf AMG-${amg_ver}
 unzip ${JARVIS_DOWNLOAD}/${amg_ver}.zip
 cd AMG-${amg_ver} 
-sed -i "46c INCLUDE_CFLAGS = -O2 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
+sed -i "46c INCLUDE_CFLAGS = -O2 -std=c11 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
 make -j
 mkdir $1/bin -p
 cp ./test/* $1/bin
-- 
Gitee


From 2a4ca341f26ddfa3970bebae060d6a8e420bf44c Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 11:43:46 +0800
Subject: [PATCH 13/34] fix templates/amg/1.2/*

---
 templates/amg/1.2/data.amg-sve.arm.cpu.config | 16 ++++++++--------
 templates/amg/1.2/data.amg.arm.cpu.config     | 15 ++++++++-------
 2 files changed, 16 insertions(+), 15 deletions(-)

diff --git a/templates/amg/1.2/data.amg-sve.arm.cpu.config b/templates/amg/1.2/data.amg-sve.arm.cpu.config
index 652c745..6e0cb29 100644
--- a/templates/amg/1.2/data.amg-sve.arm.cpu.config
+++ b/templates/amg/1.2/data.amg-sve.arm.cpu.config
@@ -11,30 +11,30 @@ export CC=mpicc CXX=mpicxx FC=mpifort
 
 [ENV]
 export CC=mpicc CXX=mpicxx FC=mpifort
-module use /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0
+module use /hpcrunner/software/moduledeps/bisheng4.0.0-hmpi2.4.1
 module add amg/1.2
 
 
 [APP]
 app_name = amg
 build_dir = ${JARVIS_ROOT}
-binary_dir = ${JARVIS_ROOT}/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin
+binary_dir = ${JARVIS_ROOT}/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2/bin
 case_dir =
 
 [BUILD]
 ls ${JARVIS_DOWNLOAD}/
 unzip ${JARVIS_DOWNLOAD}/1.2.zip
 cd AMG-1.2
-sed -i "46c INCLUDE_CFLAGS = -O2 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
+sed -i "46c INCLUDE_CFLAGS = -std=c11 -O2 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
 make -j
 
-mkdir /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin -p
-cp ./test/* /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin
+mkdir /hpcrunner/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2/bin -p
+cp ./test/* /hpcrunner/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2/bin
  
-mkdir /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0/amg -p
-cat >> /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0/amg/1.2 << EOF
+mkdir /hpcrunner/software/moduledeps/bisheng4.0.0-hmpi2.4.1/amg -p
+cat >> /hpcrunner/software/moduledeps/bisheng4.0.0-hmpi2.4.1/amg/1.2 << EOF
 #%Module1.0
-set prefix /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2
+set prefix /hpcrunner/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2
 set version 1.2
 setenv AMG_PATH \$prefix
 prepend-path PATH \$prefix/bin
diff --git a/templates/amg/1.2/data.amg.arm.cpu.config b/templates/amg/1.2/data.amg.arm.cpu.config
index 749c62e..24b7c5c 100644
--- a/templates/amg/1.2/data.amg.arm.cpu.config
+++ b/templates/amg/1.2/data.amg.arm.cpu.config
@@ -11,29 +11,30 @@ export CC=mpicc CXX=mpicxx FC=mpifort
 
 [ENV]
 export CC=mpicc CXX=mpicxx FC=mpifort
-module use /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0
+module use /hpcrunner/software/moduledeps/bisheng4.0.0-hmpi2.4.1
 module add amg/1.2
 
 
 [APP]
 app_name = amg
 build_dir = ${JARVIS_ROOT}
-binary_dir = ${JARVIS_ROOT}/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin
+binary_dir = ${JARVIS_ROOT}/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2/bin
 case_dir =
 
 [BUILD]
 ls ${JARVIS_DOWNLOAD}/
 unzip ${JARVIS_DOWNLOAD}/1.2.zip
 cd AMG-1.2
+sed -i "46c INCLUDE_CFLAGS = -O2 -std=c11 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT" Makefile.include
 make -j
 
-mkdir /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin -p
-cp ./test/* /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2/bin
+mkdir /hpcrunner/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2/bin -p
+cp ./test/* /hpcrunner/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2/bin
  
-mkdir /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0/amg -p
-cat >> /hpcrunner/software/moduledeps/bisheng3.2.0-hmpi2.4.0/amg/1.2 << EOF
+mkdir /hpcrunner/software/moduledeps/bisheng4.0.0-hmpi2.4.1/amg -p
+cat >> /hpcrunner/software/moduledeps/bisheng4.0.0-hmpi2.4.1/amg/1.2 << EOF
 #%Module1.0
-set prefix /hpcrunner/software/libs/bisheng3.2.0/hmpi2.4.0/amg/1.2
+set prefix /hpcrunner/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2
 set version 1.2
 setenv AMG_PATH \$prefix
 prepend-path PATH \$prefix/bin
-- 
Gitee


From bd6c7cdcbd5c45832c50d6302c30d291ddf57067 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 11:50:37 +0800
Subject: [PATCH 14/34] fix amg/1.2

---
 package/amg/1.2/install.sh                    | 2 +-
 templates/amg/1.2/data.amg-sve.arm.cpu.config | 2 +-
 templates/amg/1.2/data.amg.arm.cpu.config     | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/package/amg/1.2/install.sh b/package/amg/1.2/install.sh
index c50bc38..1eec549 100755
--- a/package/amg/1.2/install.sh
+++ b/package/amg/1.2/install.sh
@@ -7,7 +7,7 @@ cd ${JARVIS_ROOT}
 rm -rf AMG-${amg_ver}
 unzip ${JARVIS_DOWNLOAD}/${amg_ver}.zip
 cd AMG-${amg_ver} 
-sed -i "46c INCLUDE_CFLAGS = -O2 -std=c11 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
+sed -i "46c INCLUDE_CFLAGS = -O2 -std=c89 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
 make -j
 mkdir $1/bin -p
 cp ./test/* $1/bin
diff --git a/templates/amg/1.2/data.amg-sve.arm.cpu.config b/templates/amg/1.2/data.amg-sve.arm.cpu.config
index 6e0cb29..6e80a13 100644
--- a/templates/amg/1.2/data.amg-sve.arm.cpu.config
+++ b/templates/amg/1.2/data.amg-sve.arm.cpu.config
@@ -25,7 +25,7 @@ case_dir =
 ls ${JARVIS_DOWNLOAD}/
 unzip ${JARVIS_DOWNLOAD}/1.2.zip
 cd AMG-1.2
-sed -i "46c INCLUDE_CFLAGS = -std=c11 -O2 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
+sed -i "46c INCLUDE_CFLAGS = -std=c89 -O2 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
 make -j
 
 mkdir /hpcrunner/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2/bin -p
diff --git a/templates/amg/1.2/data.amg.arm.cpu.config b/templates/amg/1.2/data.amg.arm.cpu.config
index 24b7c5c..ab7de94 100644
--- a/templates/amg/1.2/data.amg.arm.cpu.config
+++ b/templates/amg/1.2/data.amg.arm.cpu.config
@@ -25,7 +25,7 @@ case_dir =
 ls ${JARVIS_DOWNLOAD}/
 unzip ${JARVIS_DOWNLOAD}/1.2.zip
 cd AMG-1.2
-sed -i "46c INCLUDE_CFLAGS = -O2 -std=c11 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT" Makefile.include
+sed -i "46c INCLUDE_CFLAGS = -O2 -std=c89 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT" Makefile.include
 make -j
 
 mkdir /hpcrunner/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2/bin -p
-- 
Gitee


From 2e8a33bd7baa6937c0e3bd7e1fdecd75b17a9186 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 14:28:09 +0800
Subject: [PATCH 15/34] add amg/1.2

---
 package/amg/1.2/install.sh                    | 2 +-
 templates/amg/1.2/data.amg-sve.arm.cpu.config | 2 +-
 templates/amg/1.2/data.amg.arm.cpu.config     | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/package/amg/1.2/install.sh b/package/amg/1.2/install.sh
index 1eec549..b98dc36 100755
--- a/package/amg/1.2/install.sh
+++ b/package/amg/1.2/install.sh
@@ -7,7 +7,7 @@ cd ${JARVIS_ROOT}
 rm -rf AMG-${amg_ver}
 unzip ${JARVIS_DOWNLOAD}/${amg_ver}.zip
 cd AMG-${amg_ver} 
-sed -i "46c INCLUDE_CFLAGS = -O2 -std=c89 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
+sed -i "46c INCLUDE_CFLAGS = -O2 -Wno-implicit-function-declaration -Wno-implicit-int -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
 make -j
 mkdir $1/bin -p
 cp ./test/* $1/bin
diff --git a/templates/amg/1.2/data.amg-sve.arm.cpu.config b/templates/amg/1.2/data.amg-sve.arm.cpu.config
index 6e80a13..47d216d 100644
--- a/templates/amg/1.2/data.amg-sve.arm.cpu.config
+++ b/templates/amg/1.2/data.amg-sve.arm.cpu.config
@@ -25,7 +25,7 @@ case_dir =
 ls ${JARVIS_DOWNLOAD}/
 unzip ${JARVIS_DOWNLOAD}/1.2.zip
 cd AMG-1.2
-sed -i "46c INCLUDE_CFLAGS = -std=c89 -O2 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
+sed -i "46c INCLUDE_CFLAGS =  -O2 -Wno-implicit-function-declaration -Wno-implicit-int -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" Makefile.include
 make -j
 
 mkdir /hpcrunner/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2/bin -p
diff --git a/templates/amg/1.2/data.amg.arm.cpu.config b/templates/amg/1.2/data.amg.arm.cpu.config
index ab7de94..4b95f7d 100644
--- a/templates/amg/1.2/data.amg.arm.cpu.config
+++ b/templates/amg/1.2/data.amg.arm.cpu.config
@@ -25,7 +25,7 @@ case_dir =
 ls ${JARVIS_DOWNLOAD}/
 unzip ${JARVIS_DOWNLOAD}/1.2.zip
 cd AMG-1.2
-sed -i "46c INCLUDE_CFLAGS = -O2 -std=c89 -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT" Makefile.include
+sed -i "46c INCLUDE_CFLAGS = -O2 -Wno-implicit-function-declaration -Wno-implicit-int -DTIMER_USE_MPI -DHYPRE_USING_OPENMP -fopenmp -DHYPRE_HOPSCOTCH -DHYPRE_USING_PERSISTENT_COMM -DHYPRE_BIGINT" Makefile.include
 make -j
 
 mkdir /hpcrunner/software/libs/bisheng4.0.0/hmpi2.4.1/amg/1.2/bin -p
-- 
Gitee


From ddfa4fd7494931ae69b1c65f549a37272bdba62e Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 15:28:50 +0800
Subject: [PATCH 16/34] add package/hmpi/2.4.* package/bisheng/4.0.0-mini

---
 package/bisheng/4.0.0-mini/install.sh | 11 +++++++
 package/hmpi/2.4.0/install.sh         | 44 +++++++++++++++++++++++++++
 package/hmpi/2.4.1/install.sh         | 44 +++++++++++++++++++++++++++
 3 files changed, 99 insertions(+)
 create mode 100755 package/bisheng/4.0.0-mini/install.sh
 create mode 100755 package/hmpi/2.4.0/install.sh
 create mode 100755 package/hmpi/2.4.1/install.sh

diff --git a/package/bisheng/4.0.0-mini/install.sh b/package/bisheng/4.0.0-mini/install.sh
new file mode 100755
index 0000000..59a1575
--- /dev/null
+++ b/package/bisheng/4.0.0-mini/install.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+set -e
+export bisheng_ver='BiShengCompiler-4.0.0'
+arch='x86'
+if [ x$(arch) = xaarch64 ];then
+        arch='aarch64'
+fi
+. ${DOWNLOAD_TOOL} -u https://mirrors.huaweicloud.com/kunpeng/archive/compiler/bisheng_compiler/${bisheng_ver}-${arch}-linux-mini-hpc.tar.gz
+cd ${JARVIS_TMP}
+. $CHECK_ROOT && yum -y install libatomic libstdc++ libstdc++-devel
+tar xzvf ${JARVIS_DOWNLOAD}/${bisheng_ver}-${arch}-linux-mini-hpc.tar.gz -C $1 --strip-components=1
diff --git a/package/hmpi/2.4.0/install.sh b/package/hmpi/2.4.0/install.sh
new file mode 100755
index 0000000..6f2fefe
--- /dev/null
+++ b/package/hmpi/2.4.0/install.sh
@@ -0,0 +1,44 @@
+#!/bin/bash
+set -x
+set -e
+hmpi_version='2.4.0'
+. ${DOWNLOAD_TOOL} -u https://gitee.com/kunpengcompute/hucx/repository/archive/v2.4.0-huawei.tar.gz -f hucx-${hmpi_version}-huawei.tar.gz
+. ${DOWNLOAD_TOOL} -u https://gitee.com/kunpengcompute/xucg/repository/archive/v2.4.0-huawei.tar.gz -f xucg-${hmpi_version}-huawei.tar.gz
+. ${DOWNLOAD_TOOL} -u https://gitee.com/kunpengcompute/hmpi/repository/archive/v2.4.0-huawei.tar.gz -f hmpi-${hmpi_version}-huawei.tar.gz
+cd ${JARVIS_TMP}
+. $CHECK_ROOT && yum install -y perl-Data-Dumper autoconf automake libtool binutils flex
+rm hucx-v${hmpi_version}-huawei -rf
+tar xf ${JARVIS_DOWNLOAD}/hucx-${hmpi_version}-huawei.tar.gz
+cd hucx-v${hmpi_version}-huawei
+./autogen.sh
+./contrib/configure-opt --prefix=$1/hucx --disable-numa --enable-mt CFLAGS="-Wno-unused-but-set-variable -Wno-error=int-conversion" CXXFLAGS="-Wno-unused-but-set-variable -Wno-error=int-conversion"
+make -j
+make -j install
+cd -
+export LD_LIBRARY_PATH=$1/hucx/lib:$LD_LIBRARY_PATH
+export C_INCLUDE_PATH=$1/hucx/include:$C_INCLUDE_PATH
+export CPLUS_INCLUDE_PATH=$1/hucx/include:$CPLUS_INCLUDE_PATH
+
+export CFLAGS="-Wno-unused-but-set-variable -Wno-error=int-conversion" CXXFLAGS="-Wno-unused-but-set-variable -Wno-error=int-conversion" FFLAGS="-Wno-error=int-conversion"
+
+rm xucg-v${hmpi_version}-huawei/ -rf
+tar xf ${JARVIS_DOWNLOAD}/xucg-${hmpi_version}-huawei.tar.gz
+cd xucg-v${hmpi_version}-huawei/
+mkdir build && cd build
+cmake .. -DCMAKE_INSTALL_PREFIX=$1/xucg -DCMAKE_BUILD_TYPE=Release -DUCG_BUILD_WITH_UCX=$1/hucx -DUCG_ENABLE_MT=ON -DUCG_BUILD_TESTS=OFF -DCMAKE_C_COMPILER=$CC -DCMAKE_CXX_COMPILER=$CXX -DCMAKE_Fortran_COMPILER=$FC
+make -j
+make -j install
+cd -
+export LD_LIBRARY_PATH=$1/xucg/lib:$LD_LIBRARY_PATH
+export C_INCLUDE_PATH=$1/xucg/include:$C_INCLUDE_PATH
+export CPLUS_INCLUDE_PATH=$1/xucg/include:$CPLUS_INCLUDE_PATH
+
+rm hmpi-v${hmpi_version}-huawei/ -rf
+tar xf ${JARVIS_DOWNLOAD}/hmpi-${hmpi_version}-huawei.tar.gz
+cd hmpi-v${hmpi_version}-huawei/
+./autogen.pl
+./configure --prefix=$1 --with-platform=contrib/platform/mellanox/optimized --enable-mpi1-compatibility --with-ucx=$1/hucx --with-ucg=$1/xucg
+make -j
+make -j install
+cd -
+
diff --git a/package/hmpi/2.4.1/install.sh b/package/hmpi/2.4.1/install.sh
new file mode 100755
index 0000000..727261d
--- /dev/null
+++ b/package/hmpi/2.4.1/install.sh
@@ -0,0 +1,44 @@
+#!/bin/bash
+set -x
+set -e
+hmpi_version='2.4.1'
+. ${DOWNLOAD_TOOL} -u https://gitee.com/kunpengcompute/hucx/repository/archive/v2.4.1-huawei.tar.gz -f hucx-${hmpi_version}-huawei.tar.gz
+. ${DOWNLOAD_TOOL} -u https://gitee.com/kunpengcompute/xucg/repository/archive/v2.4.1-huawei.tar.gz -f xucg-${hmpi_version}-huawei.tar.gz
+. ${DOWNLOAD_TOOL} -u https://gitee.com/kunpengcompute/hmpi/repository/archive/v2.4.1-huawei.tar.gz -f hmpi-${hmpi_version}-huawei.tar.gz
+cd ${JARVIS_TMP}
+. $CHECK_ROOT && yum install -y perl-Data-Dumper autoconf automake libtool binutils flex
+rm hucx-v${hmpi_version}-huawei -rf
+tar xf ${JARVIS_DOWNLOAD}/hucx-${hmpi_version}-huawei.tar.gz
+cd hucx-v${hmpi_version}-huawei
+./autogen.sh
+./contrib/configure-opt --prefix=$1/hucx --disable-numa --enable-mt CFLAGS="-Wno-unused-but-set-variable -Wno-error=int-conversion" CXXFLAGS="-Wno-unused-but-set-variable -Wno-error=int-conversion"
+make -j
+make -j install
+cd -
+export LD_LIBRARY_PATH=$1/hucx/lib:$LD_LIBRARY_PATH
+export C_INCLUDE_PATH=$1/hucx/include:$C_INCLUDE_PATH
+export CPLUS_INCLUDE_PATH=$1/hucx/include:$CPLUS_INCLUDE_PATH
+
+export CFLAGS="-Wno-unused-but-set-variable -Wno-error=int-conversion" CXXFLAGS="-Wno-unused-but-set-variable -Wno-error=int-conversion" FFLAGS="-Wno-error=int-conversion"
+
+rm xucg-v${hmpi_version}-huawei/ -rf
+tar xf ${JARVIS_DOWNLOAD}/xucg-${hmpi_version}-huawei.tar.gz
+cd xucg-v${hmpi_version}-huawei/
+mkdir build && cd build
+cmake .. -DCMAKE_INSTALL_PREFIX=$1/xucg -DCMAKE_BUILD_TYPE=Release -DUCG_BUILD_WITH_UCX=$1/hucx -DUCG_ENABLE_MT=ON -DUCG_BUILD_TESTS=OFF -DCMAKE_C_COMPILER=$CC -DCMAKE_CXX_COMPILER=$CXX -DCMAKE_Fortran_COMPILER=$FC
+make -j
+make -j install
+cd -
+export LD_LIBRARY_PATH=$1/xucg/lib:$LD_LIBRARY_PATH
+export C_INCLUDE_PATH=$1/xucg/include:$C_INCLUDE_PATH
+export CPLUS_INCLUDE_PATH=$1/xucg/include:$CPLUS_INCLUDE_PATH
+
+rm hmpi-v${hmpi_version}-huawei/ -rf
+tar xf ${JARVIS_DOWNLOAD}/hmpi-${hmpi_version}-huawei.tar.gz
+cd hmpi-v${hmpi_version}-huawei/
+./autogen.pl
+./configure --prefix=$1 --with-platform=contrib/platform/mellanox/optimized --enable-mpi1-compatibility --with-ucx=$1/hucx --with-ucg=$1/xucg
+make -j
+make -j install
+cd -
+
-- 
Gitee


From 09b6be53c85bde6f4bdccb6a184c2e405b590086 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 17:41:54 +0800
Subject: [PATCH 17/34] add package/med/4.0.0/install.sh

---
 package/med/4.0.0/install.sh | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)
 create mode 100755 package/med/4.0.0/install.sh

diff --git a/package/med/4.0.0/install.sh b/package/med/4.0.0/install.sh
new file mode 100755
index 0000000..e0b822e
--- /dev/null
+++ b/package/med/4.0.0/install.sh
@@ -0,0 +1,26 @@
+#download from https://mirror.spack.io/_source-cache/archive/a4/a474e90b5882ce69c5e9f66f6359c53b8b73eb448c5f631fa96e8cd2c14df004.tar.gz
+#!/bin/bash
+set -x
+set -e
+. ${DOWNLOAD_TOOL} -u https://mirror.spack.io/_source-cache/archive/a4/a474e90b5882ce69c5e9f66f6359c53b8b73eb448c5f631fa96e8cd2c14df004.tar.gz
+mv ${JARVIS_DOWNLOAD}/a474e90b5882ce69c5e9f66f6359c53b8b73eb448c5f631fa96e8cd2c14df004.tar.gz ${JARVIS_DOWNLOAD}/med-4.0.0.tar.gz
+cd ${JARVIS_TMP}
+rm med-4.0.0 -rf
+tar -xvf ${JARVIS_DOWNLOAD}/med-4.0.0.tar.gz
+cd med-4.0.0
+
+echo `h5dump --version`  >hdf5_ver.txt
+hdf5_ver=`awk '{print $3}' hdf5_ver.txt`
+ver1=$(echo $hdf5_ver | cut -d'.' -f1)
+ver2=$(echo $hdf5_ver | cut -d'.' -f2)
+ver3=$(echo $hdf5_ver | cut -d'.' -f3)
+if [[ "$HDF5_DIR" &&  $ver1 -eq 1 && $ver2 -eq 10 && $ver3 -ge 2 ]]; then
+    echo "The HDF5 environment variable is ready"
+else
+    echo "The HDF5_DIR environment variable does not exist or the version does not match, please make sure that it is configured correctly"
+    echo "The HDF5 library version used by med-fichier4.y.z MUST NOT be > 1.10 and have to be at least HDF5-1.10.2"
+    exit 99
+fi
+./configure --prefix=$1 --with-hdf5=${HDF5_DIR} --disable-python
+make -j
+make install
-- 
Gitee


From 490fc9e3b8bb2012351fa8c9aa0b9d826ac81f63 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 17:52:20 +0800
Subject: [PATCH 18/34] add package/med/4.0.0/install.sh

---
 package/med/4.0.0/install.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/package/med/4.0.0/install.sh b/package/med/4.0.0/install.sh
index e0b822e..5ffbddb 100755
--- a/package/med/4.0.0/install.sh
+++ b/package/med/4.0.0/install.sh
@@ -14,7 +14,7 @@ hdf5_ver=`awk '{print $3}' hdf5_ver.txt`
 ver1=$(echo $hdf5_ver | cut -d'.' -f1)
 ver2=$(echo $hdf5_ver | cut -d'.' -f2)
 ver3=$(echo $hdf5_ver | cut -d'.' -f3)
-if [[ "$HDF5_DIR" &&  $ver1 -eq 1 && $ver2 -eq 10 && $ver3 -ge 2 ]]; then
+if [[ "$HDF5_DIR" &&  $ver1 -eq 1 && $ver2 -eq 10 && $ver3 -eq 3 ]]; then
     echo "The HDF5 environment variable is ready"
 else
     echo "The HDF5_DIR environment variable does not exist or the version does not match, please make sure that it is configured correctly"
-- 
Gitee


From c8601d2c3b7d0ddd3435390258e1deb5c30dd71b Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 18:00:00 +0800
Subject: [PATCH 19/34] add package/hdf5/1.10.3/*

---
 package/hdf5/1.10.3/clang/install.sh | 13 +++++++++++++
 package/hdf5/1.10.3/install.sh       | 12 ++++++++++++
 2 files changed, 25 insertions(+)
 create mode 100755 package/hdf5/1.10.3/clang/install.sh
 create mode 100755 package/hdf5/1.10.3/install.sh

diff --git a/package/hdf5/1.10.3/clang/install.sh b/package/hdf5/1.10.3/clang/install.sh
new file mode 100755
index 0000000..ee6eca6
--- /dev/null
+++ b/package/hdf5/1.10.3/clang/install.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+set -x
+set -e
+. ${DOWNLOAD_TOOL} -u https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3.tar.gz
+cd ${JARVIS_TMP}
+rm -rf hdf5-1.10.3
+tar -xvf ${JARVIS_DOWNLOAD}/hdf5-1.10.3.tar.gz
+cd hdf5-1.10.3
+export CC=mpicc CXX=mpicxx FC=mpif90 F77=mpif90
+./configure --prefix=$1 --enable-fortran --enable-static=yes --enable-parallel --enable-shared CFLAGS="-O3 -fPIC -Wno-incompatible-pointer-types-discards-qualifiers -Wno-non-literal-null-conversion" FCFLAGS="-O3 -fPIC" LDFLAGS="-Wl,--build-id"
+sed -i '11835c wl="-Wl,"' libtool
+make -j
+make install
diff --git a/package/hdf5/1.10.3/install.sh b/package/hdf5/1.10.3/install.sh
new file mode 100755
index 0000000..1f237ff
--- /dev/null
+++ b/package/hdf5/1.10.3/install.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+set -x
+set -e
+. ${DOWNLOAD_TOOL} -u https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3.tar.gz
+cd ${JARVIS_TMP}
+rm -rf hdf5-1.10.3
+tar -xvf ${JARVIS_DOWNLOAD}/hdf5-1.10.3.tar.gz
+cd hdf5-1.10.3
+#CC=mpicc CXX=mpicxx FC=mpifort F77=mpifort -Wno-incompatible-pointer-types-discards-qualifiers
+./configure --prefix=$1  --enable-fortran --enable-static=yes --enable-parallel --enable-shared
+make -j
+make install
-- 
Gitee


From ecd6a928002a1733143dd718dfb75da15202da36 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 19:59:53 +0800
Subject: [PATCH 20/34] add package/scotch/6.0.9/install.sh

---
 package/scotch/6.0.9/install.sh | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)
 create mode 100755 package/scotch/6.0.9/install.sh

diff --git a/package/scotch/6.0.9/install.sh b/package/scotch/6.0.9/install.sh
new file mode 100755
index 0000000..4ed867c
--- /dev/null
+++ b/package/scotch/6.0.9/install.sh
@@ -0,0 +1,18 @@
+#!/bin/bash
+set -x
+set -e
+. ${DOWNLOAD_TOOL} -u https://www.labri.fr/perso/pelegrin/scotch/distrib/scotch_6.0.9.tar.gz
+cd ${JARVIS_TMP}
+rm  -rf scotch_6.0.9
+tar -xvf ${JARVIS_DOWNLOAD}/scotch_6.0.9.tar.gz
+cd scotch_6.0.9
+cd src
+sed -i "6c AR              = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib
+sed -i "9c CCS             = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib
+sed -i "11c CCD             = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib
+ln -s ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib Makefile.inc
+make scotch
+mkdir $1/bin -p
+mkdir $1/lib -p
+cp ../bin/* $1/bin
+cp ../lib/* $1/lib
-- 
Gitee


From 48015ca05a6a69f057cb9021937a02c0f4572bc8 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 20:13:22 +0800
Subject: [PATCH 21/34] fix package/scotch/6.0.9/install.sh

---
 package/scotch/6.0.9/install.sh | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/package/scotch/6.0.9/install.sh b/package/scotch/6.0.9/install.sh
index 4ed867c..9a108ee 100755
--- a/package/scotch/6.0.9/install.sh
+++ b/package/scotch/6.0.9/install.sh
@@ -7,9 +7,6 @@ rm  -rf scotch_6.0.9
 tar -xvf ${JARVIS_DOWNLOAD}/scotch_6.0.9.tar.gz
 cd scotch_6.0.9
 cd src
-sed -i "6c AR              = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib
-sed -i "9c CCS             = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib
-sed -i "11c CCD             = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib
 ln -s ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib Makefile.inc
 make scotch
 mkdir $1/bin -p
-- 
Gitee


From 8c95053bc5634b0e1f294891cf19bdf94b62b1cd Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 18 Jul 2024 20:26:11 +0800
Subject: [PATCH 22/34] add package/metis/5.1.0/install.sh

---
 package/metis/5.1.0/install.sh | 7 +++++++
 1 file changed, 7 insertions(+)
 create mode 100755 package/metis/5.1.0/install.sh

diff --git a/package/metis/5.1.0/install.sh b/package/metis/5.1.0/install.sh
new file mode 100755
index 0000000..d02f8fa
--- /dev/null
+++ b/package/metis/5.1.0/install.sh
@@ -0,0 +1,7 @@
+. ${DOWNLOAD_TOOL} -u https://src.fedoraproject.org/lookaside/pkgs/metis/metis-5.1.0.tar.gz/5465e67079419a69e0116de24fce58fe/metis-5.1.0.tar.gz
+cd ${JARVIS_TMP}
+rm -rf metis-5.1.0
+tar -xf ${JARVIS_DOWNLOAD}/metis-5.1.0.tar.gz
+cd metis-5.1.0
+make config prefix=$1
+make install
-- 
Gitee


From 8439ed41332c882fb8828b8cc797c98dba82340d Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Fri, 19 Jul 2024 17:08:12 +0800
Subject: [PATCH 23/34] add package/python2/2.7.16/install.sh

---
 package/python2/2.7.16/install.sh | 12 ++++++++++++
 1 file changed, 12 insertions(+)
 create mode 100755 package/python2/2.7.16/install.sh

diff --git a/package/python2/2.7.16/install.sh b/package/python2/2.7.16/install.sh
new file mode 100755
index 0000000..74a0b67
--- /dev/null
+++ b/package/python2/2.7.16/install.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+set -x
+set -e
+. ${DOWNLOAD_TOOL} -u https://www.python.org/ftp/python/2.7.16/Python-2.7.16.tgz
+cd ${JARVIS_TMP}
+. $CHECK_ROOT && yum -y install zlib-devel bzip2-devel openssl-devel ncurses-devel sqlite-devel readline-devel tk-devel gcc make libffi-devel
+rm Python-2.7.16 -rf
+tar -zxvf ${JARVIS_DOWNLOAD}/Python-2.7.16.tgz
+cd Python-2.7.16
+./configure --prefix=$1  CFLAGS="-Wno-implicit-function-declaration" --with-ensurepip=yes
+make
+make install
-- 
Gitee


From 29f8dd88368ace22d9f7f835f0b97846f02636d9 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 25 Jul 2024 15:53:47 +0800
Subject: [PATCH 24/34] add templates/Code_Saturne/7.0.6/

---
 templates/Code_Saturne/7.0.6/cplym1.patch     | 149 ++++++++++++++++++
 .../data.Code_Saturne.arm.bs-sve.cpu.config   |  65 ++++++++
 2 files changed, 214 insertions(+)
 create mode 100644 templates/Code_Saturne/7.0.6/cplym1.patch
 create mode 100644 templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config

diff --git a/templates/Code_Saturne/7.0.6/cplym1.patch b/templates/Code_Saturne/7.0.6/cplym1.patch
new file mode 100644
index 0000000..80bb019
--- /dev/null
+++ b/templates/Code_Saturne/7.0.6/cplym1.patch
@@ -0,0 +1,149 @@
+--- cplym1.f90	2023-05-10 16:03:43.000000000 +0800
++++ cplym1.f90	2024-07-25 15:28:18.616509346 +0800
+@@ -170,16 +170,16 @@ double precision ai(ngazem)  , bi(ngazem
+ double precision anu1 , anu2 , anu3
+ double precision s1, s2, s3, sm1, sm2
+ double precision den1   , den2   , somm
+-#ifdef DEBUG
++!#ifdef DEBUG
+ double precision sommf  , mom0   , mom1   , mom2
+-#endif
++!#endif
+ double precision zchx10 , zchx20 , zco0   , zco20
+ double precision zn20   , zh2o0  , zo20
+ double precision ychx10 , ychx20
+-#ifdef DEBUG
++!#ifdef DEBUG
+ double precision yco0   , yco20
+ double precision yn20   , yh2o0  , yo20
+-#endif
++!#endif
+ double precision zchx11 , zchx21 , zco1   , zco21
+ double precision zn21   , zh2o1  , zo21
+ double precision zchx12 , zchx22 , zco2   , zco22
+@@ -359,7 +359,7 @@ do iel = 1, ncel
+     zco20   = zero
+     zh2o0   = zero
+ ! ---- Test
+-#ifdef DEBUG
++!#ifdef DEBUG
+     ychx10  = zchx10*wmchx1
+     ychx20  = zchx20*wmchx2
+     yco0    = zco0 * wmco
+@@ -377,7 +377,7 @@ do iel = 1, ncel
+       write(NFECRA,*) 'F3M',F3M(IEL)
+       write(NFECRA,*) 'F4M',F4M(IEL)
+     endif
+-#endif
++!#endif
+ ! ---- Fin test
+ 
+ ! --> Calcul de la composition du melange
+@@ -421,7 +421,7 @@ do iel = 1, ncel
+     xiner(iel) = zn23   * wmn2
+ 
+ ! ---- Test
+-#ifdef DEBUG
++!#ifdef DEBUG
+     somm = fuel1(iel) + fuel2(iel) + fuel3(iel)                   &
+          + prod1(iel) + prod2(iel)                                &
+          + oxyd(iel)  + xiner(iel)
+@@ -461,7 +461,7 @@ do iel = 1, ncel
+       write(NFECRA,*) 'Prod2',PROD2(IEL)
+       write(NFECRA,*) 'SOMME Y', SOMM
+     endif
+-#endif
++!#endif
+ ! ---- Fin Test
+ 
+   endif
+@@ -543,7 +543,7 @@ do iel = 1, ncel
+     bc0(in2  ) = an2f4*cc4
+ 
+ ! ---- Test
+-#ifdef DEBUG
++!#ifdef DEBUG
+     wmole(ichx1) = wmchx1
+     wmole(ichx2) = wmchx2
+     somm  = 0.d0
+@@ -561,7 +561,7 @@ do iel = 1, ncel
+       write(NFECRA,*) 'PB CELLULE ',IEL
+       write(NFECRA,*) 'SOMM BC0', SOMMF
+     endif
+-#endif
++!#endif
+ ! ---- Fin Test
+ 
+ ! --> Les pics de Dirac sont situes dans des domaines
+@@ -629,7 +629,7 @@ do iel = 1, ncel
+ !      CHX1 ne doit plus exister AC1(ICHX1) = BC1(ICHX1) = 0
+ 
+ ! ---- Test
+-#ifdef DEBUG
++!#ifdef DEBUG
+     somm  = 0.d0
+     sommf = 0.d0
+     do ige = 1, (ngaze-2*ncharb)
+@@ -655,7 +655,7 @@ do iel = 1, ncel
+       write(NFECRA,*) 'AC01(IO2)', AC0(IO2),AC1(IO2)
+       write(NFECRA,*) 'BC01(IO2)', BC0(IO2),BC1(IO2)
+     endif
+-#endif
++!#endif
+ ! ---- Fin Test
+ 
+     endif
+@@ -707,7 +707,7 @@ do iel = 1, ncel
+ !      AC2(ICHX1) = BC2(ICHX1) = AC2(ICHX2) = BC2(ICHX2) = 0
+ 
+ ! ---- Test
+-#ifdef DEBUG
++!#ifdef DEBUG
+     somm  = 0.d0
+     sommf = 0.d0
+     do ige = 1, (ngaze-2*ncharb)
+@@ -737,7 +737,7 @@ do iel = 1, ncel
+       write(NFECRA,*) 'AC12(IO2)', AC1(IO2),AC2(IO2)
+       write(NFECRA,*) 'BC12(IO2)', BC1(IO2),BC2(IO2)
+     endif
+-#endif
++!#endif
+ ! ---- Fin Test
+ 
+ ! --> Integration dans le domaine intermediaire
+@@ -784,7 +784,7 @@ do iel = 1, ncel
+ !      AC3(ICO  ) = BC3(ICO  ) = 0
+ 
+ ! ---- Test
+-#ifdef DEBUG
++!#ifdef DEBUG
+     somm  = 0.d0
+     sommf = 0.d0
+     do ige = 1, (ngaze-2*ncharb)
+@@ -818,7 +818,7 @@ do iel = 1, ncel
+       write(NFECRA,*) 'AC23(IO2)', AC2(IO2),AC3(IO2)
+       write(NFECRA,*) 'BC23(IO2)', BC2(IO2),BC3(IO2)
+     endif
+-#endif
++!#endif
+ ! ---- Fin Test
+ 
+ ! --> Integration dans le domaine pauvre
+@@ -849,7 +849,7 @@ do iel = 1, ncel
+     xiner(iel) = zc(in2  ) * wmn2
+ 
+ ! ---- Test
+-#ifdef DEBUG
++!#ifdef DEBUG
+     somm = fuel1(iel) + fuel2(iel) + fuel3(iel)                   &
+          + prod1(iel) + prod2(iel)                                &
+          + oxyd(iel)  + xiner(iel)
+@@ -908,7 +908,7 @@ do iel = 1, ncel
+       write(NFECRA,*) 'Prod2',PROD2(IEL)
+       write(NFECRA,*) 'SOMME', SOMM
+     endif
+-#endif
++!#endif
+ ! ---- Fin Test
+ 
+   endif
diff --git a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config
new file mode 100644
index 0000000..595424d
--- /dev/null
+++ b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config
@@ -0,0 +1,65 @@
+[SERVER]
+11.11.11.11
+
+[DOWNLOAD]
+Code_Saturne/7.0.6 https://github.com/code-saturne/code_saturne/archive/refs/tags/v7.0.6.tar.gz
+
+
+[DEPENDENCY]
+yum install automake libtool -y
+export CC=clang FC=flang CXX=clang++
+yum install python3-qt5  patch -y
+
+sed -i '10c  ./configure --prefix=$1 --enable-fortran --enable-static=yes --enable-parallel --enable-shared CFLAGS="-O3 -fPIC -Wno-incompatible-pointer-types-discards-qualifiers  -Wno-non-literal-null-conversion -Wno-implicit-function-declaration -Wno-implicit-int -Wno-incompatible-function-pointer-types " FCFLAGS="-O3 -fPIC" LDFLAGS="-Wl,--build-id"' package/hdf5/1.10.3/clang/install.sh
+./jarvis -install package/hdf5/1.10.3/clang/ bisheng+mpi
+module use /hpcrunner/software/moduledeps
+module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.3
+export HDF5_DIR=${HDF5_CLANG_PATH}
+
+./jarvis -install package/med/4.0.0/ bisheng+mpi
+module add bisheng4.0.0-hmpi2.4.1/med/4.0.0
+
+sed -i '9a sed -i "6c AR              = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib' package/scotch/6.0.9/install.sh
+sed -i '10a sed -i "9c CCS             = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib' package/scotch/6.0.9/install.sh
+sed -i '11a sed -i "11c CCD             = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib' package/scotch/6.0.9/install.sh
+./jarvis -install package/scotch/6.0.9 bisheng+mpi
+module add bisheng4.0.0-hmpi2.4.1/scotch/6.0.9
+
+./jarvis -install package/metis/5.1.0 bisheng
+module add bisheng4.0.0/metis/5.1.0
+
+
+[ENV]
+module use /hpcrunner/software/moduledeps
+module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.3
+export HDF5_DIR=${HDF5_CLANG_PATH}
+module add bisheng4.0.0-hmpi2.4.1/med/4.0.0
+module add bisheng4.0.0-hmpi2.4.1/scotch/6.0.9
+module add bisheng4.0.0/metis/5.1.0
+module unload bisheng/kml/kblas/serial-nolocking
+module add bisheng/kml/kblas/omp
+export PATH=/hpcrunner/software/apps/bisheng4.0.0-hmpi2.4.1/Code_Saturne/7.0.6/bin:$PATH
+
+[APP]
+app_name = Code_Saturne
+build_dir = ${JARVIS_TMP}
+binary_dir = ${JARVIS_ROOT}/software/apps/bisheng4.0.0-hmpi2.4.1/Code_Saturne/7.0.6
+case_dir =
+
+[BUILD]
+rm code_saturne-7.0.6 -rf
+tar -xvf ${JARVIS_DOWNLOAD}/v7.0.6.tar.gz
+cd code_saturne-7.0.6
+cd src/comb/
+patch -p0 < /hpcrunner/templates/Code_Saturne/7.0.6/cplym1.patch 
+sed -i "s/#/\!#/g" cppdfr.f90
+cd -
+./sbin/bootstrap
+CC=mpicc FC=mpifort CXX=mpicxx ./configure  --prefix=${JARVIS_ROOT}/software/apps/bisheng4.0.0-hmpi2.4.1/Code_Saturne/7.0.6 --with-blas-lib=/hpcrunner/HPCKit/latest/kml/bisheng/lib/kblas/omp --with-hdf5=${HDF5_CLANG_PATH} --with-scotch=${SCOTCH_PATH} --with-metis=${METIS_PATH} --with-med=${MED_PATH} --enable-shared --with-mpi CXXFLAGS="-O3 -std=c++11 -march=armv8.2-a -mtune=tsv110 -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true" 
+make -j 32
+make install
+
+[RUN]
+run =
+binary =
+nodes = 1
-- 
Gitee


From c737bb55c001a63f236f3e736ee598ea4e050d71 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 25 Jul 2024 16:00:24 +0800
Subject: [PATCH 25/34] add
 templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config

---
 .../7.0.6/data.Code_Saturne.arm.bs.cpu.config | 65 +++++++++++++++++++
 1 file changed, 65 insertions(+)
 create mode 100644 templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config

diff --git a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
new file mode 100644
index 0000000..c32ec81
--- /dev/null
+++ b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
@@ -0,0 +1,65 @@
+[SERVER]
+11.11.11.11
+
+[DOWNLOAD]
+Code_Saturne/7.0.6 https://github.com/code-saturne/code_saturne/archive/refs/tags/v7.0.6.tar.gz
+
+
+[DEPENDENCY]
+yum install automake libtool -y
+export CC=clang FC=flang CXX=clang++
+yum install python3-qt5  patch -y
+
+sed -i '10c  ./configure --prefix=$1 --enable-fortran --enable-static=yes --enable-parallel --enable-shared CFLAGS="-O3 -fPIC -Wno-incompatible-pointer-types-discards-qualifiers  -Wno-non-literal-null-conversion -Wno-implicit-function-declaration -Wno-implicit-int -Wno-incompatible-function-pointer-types " FCFLAGS="-O3 -fPIC" LDFLAGS="-Wl,--build-id"' package/hdf5/1.10.3/clang/install.sh
+./jarvis -install package/hdf5/1.10.3/clang/ bisheng+mpi
+module use /hpcrunner/software/moduledeps
+module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.3
+export HDF5_DIR=${HDF5_CLANG_PATH}
+
+./jarvis -install package/med/4.0.0/ bisheng+mpi
+module add bisheng4.0.0-hmpi2.4.1/med/4.0.0
+
+sed -i '9a sed -i "6c AR              = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib' package/scotch/6.0.9/install.sh
+sed -i '10a sed -i "9c CCS             = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib' package/scotch/6.0.9/install.sh
+sed -i '11a sed -i "11c CCD             = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib' package/scotch/6.0.9/install.sh
+./jarvis -install package/scotch/6.0.9 bisheng+mpi
+module add bisheng4.0.0-hmpi2.4.1/scotch/6.0.9
+
+./jarvis -install package/metis/5.1.0 bisheng
+module add bisheng4.0.0/metis/5.1.0
+
+
+[ENV]
+module use /hpcrunner/software/moduledeps
+module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.3
+export HDF5_DIR=${HDF5_CLANG_PATH}
+module add bisheng4.0.0-hmpi2.4.1/med/4.0.0
+module add bisheng4.0.0-hmpi2.4.1/scotch/6.0.9
+module add bisheng4.0.0/metis/5.1.0
+module unload bisheng/kml/kblas/serial-nolocking
+module add bisheng/kml/kblas/omp
+export PATH=/hpcrunner/software/apps/bisheng4.0.0-hmpi2.4.1/Code_Saturne/7.0.6/bin:$PATH
+
+[APP]
+app_name = Code_Saturne
+build_dir = ${JARVIS_TMP}
+binary_dir = ${JARVIS_ROOT}/software/apps/bisheng4.0.0-hmpi2.4.1/Code_Saturne/7.0.6
+case_dir =
+
+[BUILD]
+rm code_saturne-7.0.6 -rf
+tar -xvf ${JARVIS_DOWNLOAD}/v7.0.6.tar.gz
+cd code_saturne-7.0.6
+cd src/comb/
+patch -p0 < /hpcrunner/templates/Code_Saturne/7.0.6/cplym1.patch 
+sed -i "s/#/\!#/g" cppdfr.f90
+cd -
+./sbin/bootstrap
+CC=mpicc FC=mpifort CXX=mpicxx ./configure  --prefix=${JARVIS_ROOT}/software/apps/bisheng4.0.0-hmpi2.4.1/Code_Saturne/7.0.6 --with-blas-lib=/hpcrunner/HPCKit/latest/kml/bisheng/lib/kblas/omp --with-hdf5=${HDF5_CLANG_PATH} --with-scotch=${SCOTCH_PATH} --with-metis=${METIS_PATH} --with-med=${MED_PATH} --enable-shared --with-mpi CXXFLAGS="-O3 -std=c++11 -march=armv8.2-a" 
+make -j 32
+make install
+
+[RUN]
+run =
+binary =
+nodes = 1
-- 
Gitee


From 8ef80471c3b1c8ec4eb0585668ffacfb2d64c20a Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Fri, 26 Jul 2024 10:58:29 +0800
Subject: [PATCH 26/34] add
 templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs*

---
 .../Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config   | 1 +
 templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config | 1 +
 2 files changed, 2 insertions(+)

diff --git a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config
index 595424d..539233e 100644
--- a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config
+++ b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config
@@ -16,6 +16,7 @@ module use /hpcrunner/software/moduledeps
 module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.3
 export HDF5_DIR=${HDF5_CLANG_PATH}
 
+export CC=mpicc FC=mpifort CXX=mpicxx
 ./jarvis -install package/med/4.0.0/ bisheng+mpi
 module add bisheng4.0.0-hmpi2.4.1/med/4.0.0
 
diff --git a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
index c32ec81..d835c0c 100644
--- a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
+++ b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
@@ -16,6 +16,7 @@ module use /hpcrunner/software/moduledeps
 module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.3
 export HDF5_DIR=${HDF5_CLANG_PATH}
 
+export CC=mpicc FC=mpifort CXX=mpicxx
 ./jarvis -install package/med/4.0.0/ bisheng+mpi
 module add bisheng4.0.0-hmpi2.4.1/med/4.0.0
 
-- 
Gitee


From db0373d0ccffbfa0d438a92578462c308b7b9f4b Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Fri, 26 Jul 2024 14:44:14 +0800
Subject: [PATCH 27/34] add
 templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config

---
 .../7.0.6/data.Code_Saturne.arm.bs.cpu.config          | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
index d835c0c..f4c9764 100644
--- a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
+++ b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
@@ -25,9 +25,10 @@ sed -i '10a sed -i "9c CCS             = clang" ./Make.inc/Makefile.inc.x86-64_p
 sed -i '11a sed -i "11c CCD             = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib' package/scotch/6.0.9/install.sh
 ./jarvis -install package/scotch/6.0.9 bisheng+mpi
 module add bisheng4.0.0-hmpi2.4.1/scotch/6.0.9
-
-./jarvis -install package/metis/5.1.0 bisheng
-module add bisheng4.0.0/metis/5.1.0
+echo "=========="
+echo $SCOTCH_PATH
+./jarvis -install package/metis/5.1.0 bisheng+mpi
+module add bisheng4.0.0-hmpi2.4.1/metis/5.1.0
 
 
 [ENV]
@@ -36,7 +37,8 @@ module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.3
 export HDF5_DIR=${HDF5_CLANG_PATH}
 module add bisheng4.0.0-hmpi2.4.1/med/4.0.0
 module add bisheng4.0.0-hmpi2.4.1/scotch/6.0.9
-module add bisheng4.0.0/metis/5.1.0
+module add bisheng4.0.0-hmpi2.4.1/metis/5.1.0
+export SCOTCH=${SCOTCH_PATH}
 module unload bisheng/kml/kblas/serial-nolocking
 module add bisheng/kml/kblas/omp
 export PATH=/hpcrunner/software/apps/bisheng4.0.0-hmpi2.4.1/Code_Saturne/7.0.6/bin:$PATH
-- 
Gitee


From f7c28e4ea92bf2713cd7007a16940944dc0a75eb Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Fri, 26 Jul 2024 15:55:39 +0800
Subject: [PATCH 28/34] add
 templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config

---
 .../7.0.6/data.Code_Saturne.arm.bs.cpu.config            | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
index f4c9764..6e11718 100644
--- a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
+++ b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
@@ -25,8 +25,6 @@ sed -i '10a sed -i "9c CCS             = clang" ./Make.inc/Makefile.inc.x86-64_p
 sed -i '11a sed -i "11c CCD             = clang" ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib' package/scotch/6.0.9/install.sh
 ./jarvis -install package/scotch/6.0.9 bisheng+mpi
 module add bisheng4.0.0-hmpi2.4.1/scotch/6.0.9
-echo "=========="
-echo $SCOTCH_PATH
 ./jarvis -install package/metis/5.1.0 bisheng+mpi
 module add bisheng4.0.0-hmpi2.4.1/metis/5.1.0
 
@@ -50,6 +48,13 @@ binary_dir = ${JARVIS_ROOT}/software/apps/bisheng4.0.0-hmpi2.4.1/Code_Saturne/7.
 case_dir =
 
 [BUILD]
+
+echo "======"
+echo $HDF5_CLANG_PATH
+echo $SCOTCH_PATH
+echo $METIS_PATH
+echo $MED_PATH
+echo "======"
 rm code_saturne-7.0.6 -rf
 tar -xvf ${JARVIS_DOWNLOAD}/v7.0.6.tar.gz
 cd code_saturne-7.0.6
-- 
Gitee


From d959de06012d3e28d1eba0e9eb1ba932b7aed84e Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Mon, 29 Jul 2024 10:13:13 +0800
Subject: [PATCH 29/34] add package/scotch/6.0.9/install.sh

---
 package/scotch/6.0.9/install.sh | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/package/scotch/6.0.9/install.sh b/package/scotch/6.0.9/install.sh
index 9a108ee..5ef43cc 100755
--- a/package/scotch/6.0.9/install.sh
+++ b/package/scotch/6.0.9/install.sh
@@ -11,5 +11,7 @@ ln -s ./Make.inc/Makefile.inc.x86-64_pc_linux2.shlib Makefile.inc
 make scotch
 mkdir $1/bin -p
 mkdir $1/lib -p
+mkdir $1/include -p
 cp ../bin/* $1/bin
 cp ../lib/* $1/lib
+cp ../include/* $1/include
-- 
Gitee


From d33d2fd69870155abea3c33d4968edc6e7a530f5 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Mon, 29 Jul 2024 17:17:23 +0800
Subject: [PATCH 30/34] add package/metis/5.1.0/install.sh

---
 package/metis/5.1.0/install.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/package/metis/5.1.0/install.sh b/package/metis/5.1.0/install.sh
index d02f8fa..8066c74 100755
--- a/package/metis/5.1.0/install.sh
+++ b/package/metis/5.1.0/install.sh
@@ -3,5 +3,5 @@ cd ${JARVIS_TMP}
 rm -rf metis-5.1.0
 tar -xf ${JARVIS_DOWNLOAD}/metis-5.1.0.tar.gz
 cd metis-5.1.0
-make config prefix=$1
+make config prefix=$1 shared=1
 make install
-- 
Gitee


From d5e931e33cc09561ab56f97644be98e3a2986248 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Tue, 30 Jul 2024 10:53:09 +0800
Subject: [PATCH 31/34] add
 templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs

---
 .../7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config             | 2 +-
 .../Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config    | 4 +---
 2 files changed, 2 insertions(+), 4 deletions(-)

diff --git a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config
index 539233e..7c5b155 100644
--- a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config
+++ b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs-sve.cpu.config
@@ -6,7 +6,7 @@ Code_Saturne/7.0.6 https://github.com/code-saturne/code_saturne/archive/refs/tag
 
 
 [DEPENDENCY]
-yum install automake libtool -y
+yum install automake libtool xz -y
 export CC=clang FC=flang CXX=clang++
 yum install python3-qt5  patch -y
 
diff --git a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
index 6e11718..a0bd3a8 100644
--- a/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
+++ b/templates/Code_Saturne/7.0.6/data.Code_Saturne.arm.bs.cpu.config
@@ -6,7 +6,7 @@ Code_Saturne/7.0.6 https://github.com/code-saturne/code_saturne/archive/refs/tag
 
 
 [DEPENDENCY]
-yum install automake libtool -y
+yum install automake libtool xz -y
 export CC=clang FC=flang CXX=clang++
 yum install python3-qt5  patch -y
 
@@ -32,11 +32,9 @@ module add bisheng4.0.0-hmpi2.4.1/metis/5.1.0
 [ENV]
 module use /hpcrunner/software/moduledeps
 module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.3
-export HDF5_DIR=${HDF5_CLANG_PATH}
 module add bisheng4.0.0-hmpi2.4.1/med/4.0.0
 module add bisheng4.0.0-hmpi2.4.1/scotch/6.0.9
 module add bisheng4.0.0-hmpi2.4.1/metis/5.1.0
-export SCOTCH=${SCOTCH_PATH}
 module unload bisheng/kml/kblas/serial-nolocking
 module add bisheng/kml/kblas/omp
 export PATH=/hpcrunner/software/apps/bisheng4.0.0-hmpi2.4.1/Code_Saturne/7.0.6/bin:$PATH
-- 
Gitee


From 4b1f4836bdebc722da99fb231f74432a8c4e9fc6 Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 1 Aug 2024 15:43:19 +0800
Subject: [PATCH 32/34] add templates/MITGCM/c67o/*

---
 .../c67o/data.MITGCM.arm.bs-sve.cpu.config    | 55 ++++++++++++++++
 .../MITGCM/c67o/data.MITGCM.arm.bs.cpu.config | 54 ++++++++++++++++
 templates/MITGCM/c67o/linux_arm64_gfortran    | 63 +++++++++++++++++++
 3 files changed, 172 insertions(+)
 create mode 100644 templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config
 create mode 100644 templates/MITGCM/c67o/data.MITGCM.arm.bs.cpu.config
 create mode 100644 templates/MITGCM/c67o/linux_arm64_gfortran

diff --git a/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config b/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config
new file mode 100644
index 0000000..071a351
--- /dev/null
+++ b/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config
@@ -0,0 +1,55 @@
+[SERVER]
+11.11.11.11
+
+[DOWNLOAD]
+MITgcm/c67o http://mitgcm.org/download/other_checkpoints/MITgcm_c67o.tar.gz
+
+[DEPENDENCY]
+export CC=mpicc FC=mpifort CXX=mpicxx
+
+sed -i '10c ./configure --prefix=$1 --enable-fortran --enable-static=yes --enable-parallel --enable-shared CFLAGS="-O3 -fPIC -Wno-incompatible-pointer-types-discards-qualifiers -Wno-non-literal-null-conversion -Wno-int-conversion -Wno-implicit-int -Wno-implicit-function-declaration -Wno-incompatible-function-pointer-types" FCFLAGS="-O3 -fPIC" LDFLAGS="-Wl,--build-id"' package/hdf5/1.10.1/clang/install.sh
+./jarvis -install package/hdf5/1.10.1/clang/ bisheng+mpi
+module use /hpcrunner/software/moduledeps
+module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.1
+./jarvis -install package/pnetcdf/1.12.3 bisheng+mpi
+module add bisheng4.0.0-hmpi2.4.1/pnetcdf/1.12.3
+./jarvis -install package/netcdf/4.7.0/clang/ bisheng+mpi
+module add bisheng4.0.0-hmpi2.4.1/netcdf-clang/4.7.4
+
+[ENV]
+module use /hpcrunner/software/moduledeps
+module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.1
+module add bisheng4.0.0-hmpi2.4.1/pnetcdf/1.12.3
+module add bisheng4.0.0-hmpi2.4.1/netcdf-clang/4.7.4
+export HMPI_PATH=/hpcrunner/HPCKit/24.6.30/hmpi/bisheng/hmpi
+export HDF5_DIR=$HDF5_CLANG_PATH
+export NETCDF_DIR=$NETCDF_CLANG_PATH
+export PNETCDF_DIR=$PNETCDF_PATH
+export PATH=/hpcrunner/MITgcm/verification/exp4/run:$PATH
+
+[APP]
+app_name = 
+build_dir = ${JARVIS_ROOT}
+binary_dir = ${JARVIS_ROOT}/MITgcm/verification/exp4/run
+case_dir =
+
+[BUILD]
+
+rm MITgcm -rf
+tar -xvf ${JARVIS_DOWNLOAD}/MITgcm_c67o.tar.gz
+cd MITgcm
+sed -i '13c CFLAGS='-O3 -Wno-implicit-int -Wno-implicit-function-declaration -Wno-incompatible-function-pointer-types -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true " ' ${JARVIS_ROOT}/templates/MITGCM/c67o/linux_arm64_gfortran
+cp ${JARVIS_ROOT}/templates/MITGCM/c67o/linux_arm64_gfortran tools/build_options
+rm verification/exp4/code/SIZE.h -f
+mv verification/exp4/code/SIZE.h_mpi verification/exp4/code/SIZE.h
+cd verification/exp4/build
+../../../tools/genmake2 -mods=../code -mpi -of=../../../tools/build_options/linux_arm64_gfortran
+make depend
+make
+cp mitgcmuv  ../run/
+
+[RUN]
+run =
+binary =
+nodes = 1
+
diff --git a/templates/MITGCM/c67o/data.MITGCM.arm.bs.cpu.config b/templates/MITGCM/c67o/data.MITGCM.arm.bs.cpu.config
new file mode 100644
index 0000000..ddc3423
--- /dev/null
+++ b/templates/MITGCM/c67o/data.MITGCM.arm.bs.cpu.config
@@ -0,0 +1,54 @@
+[SERVER]
+11.11.11.11
+
+[DOWNLOAD]
+MITgcm/c67o http://mitgcm.org/download/other_checkpoints/MITgcm_c67o.tar.gz
+
+[DEPENDENCY]
+export CC=mpicc FC=mpifort CXX=mpicxx
+
+sed -i '10c ./configure --prefix=$1 --enable-fortran --enable-static=yes --enable-parallel --enable-shared CFLAGS="-O3 -fPIC -Wno-incompatible-pointer-types-discards-qualifiers -Wno-non-literal-null-conversion -Wno-int-conversion -Wno-implicit-int -Wno-implicit-function-declaration -Wno-incompatible-function-pointer-types" FCFLAGS="-O3 -fPIC" LDFLAGS="-Wl,--build-id"' package/hdf5/1.10.1/clang/install.sh
+./jarvis -install package/hdf5/1.10.1/clang/ bisheng+mpi
+module use /hpcrunner/software/moduledeps
+module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.1
+./jarvis -install package/pnetcdf/1.12.3 bisheng+mpi
+module add bisheng4.0.0-hmpi2.4.1/pnetcdf/1.12.3
+./jarvis -install package/netcdf/4.7.0/clang/ bisheng+mpi
+module add bisheng4.0.0-hmpi2.4.1/netcdf-clang/4.7.4
+
+[ENV]
+module use /hpcrunner/software/moduledeps
+module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.1
+module add bisheng4.0.0-hmpi2.4.1/pnetcdf/1.12.3
+module add bisheng4.0.0-hmpi2.4.1/netcdf-clang/4.7.4
+export HMPI_PATH=/hpcrunner/HPCKit/24.6.30/hmpi/bisheng/hmpi
+export HDF5_DIR=$HDF5_CLANG_PATH
+export NETCDF_DIR=$NETCDF_CLANG_PATH
+export PNETCDF_DIR=$PNETCDF_PATH
+export PATH=/hpcrunner/MITgcm/verification/exp4/run:$PATH
+
+[APP]
+app_name = 
+build_dir = ${JARVIS_ROOT}
+binary_dir = ${JARVIS_ROOT}/MITgcm/verification/exp4/run
+case_dir =
+
+[BUILD]
+
+rm MITgcm -rf
+tar -xvf ${JARVIS_DOWNLOAD}/MITgcm_c67o.tar.gz
+cd MITgcm
+cp ${JARVIS_ROOT}/templates/MITGCM/c67o/linux_arm64_gfortran tools/build_options
+rm verification/exp4/code/SIZE.h -f
+mv verification/exp4/code/SIZE.h_mpi verification/exp4/code/SIZE.h
+cd verification/exp4/build
+../../../tools/genmake2 -mods=../code -mpi -of=../../../tools/build_options/linux_arm64_gfortran
+make depend
+make
+cp mitgcmuv  ../run/
+
+[RUN]
+run =
+binary =
+nodes = 1
+
diff --git a/templates/MITGCM/c67o/linux_arm64_gfortran b/templates/MITGCM/c67o/linux_arm64_gfortran
new file mode 100644
index 0000000..340574b
--- /dev/null
+++ b/templates/MITGCM/c67o/linux_arm64_gfortran
@@ -0,0 +1,63 @@
+#!/bin/bash
+MPI='true'
+CC=mpicc
+FC=mpif77
+F90C=mpif90
+DEFINES='-DWORDLENGTH=4 -DNML_TERMINATOR -DALLOW_USE_MPI -DALWAYS_USE_MPI'
+EXTENDED_SRC_FLAG='-ffixed-line-length-132'
+F90FIXEDFORMAT='-ffixed-form'
+GET_FC_VERSION="--version"
+OMPFLAG='-fopenmp'
+NOOPTFLAGS='-O0 -g'
+NOOPTFILES=''
+CFLAGS='-O3 -Wno-implicit-int -Wno-implicit-function-declaration -Wno-incompatible-function-pointer-types '
+FFLAGS="$FFLAGS -fconvert=big-endian -fimplicit-none"
+CFLAGS="$CFLAGS -fPIC"
+FFLAGS="$FFLAGS -fPIC"
+#- with FC 19, need to use this without -fPIC (which cancels -mcmodel option):
+# CFLAGS="$CFLAGS -mcmodel=medium"
+# FFLAGS="$FFLAGS -mcmodel=medium"
+#- might want to use '-fdefault-real-8' for fizhi pkg:
+#FFLAGS="$FFLAGS -fdefault-real-8 -fdefault-double-8"
+if test "x$IEEE" = x ; then #- with optimisation:
+#- full optimisation
+FOPTIM='-O3 -funroll-loops'
+NOOPTFILES="$NOOPTFILES ini_masks_etc.F"
+#- can use -O2 (safe optimisation) to avoid Pb with some gcc version of -O3:
+#FOPTIM='-O2 -funroll-loops'
+else
+# these may also be useful, but require specific gfortran versions:
+# -Wnonstd-intrinsics for gfortran <= 4.3
+# -Wintrinsics-std for gfortran >= 4.4
+# -Wno-tabs for gfortran >= 4.3
+# -Wno-unused-dummy-argument for gfortran >= 4.6
+#FFLAGS="$FFLAGS -Waliasing -Wampersand -Wsurprising -Wline-truncation"
+#- or simply:
+FFLAGS="$FFLAGS -Wall"
+#- to get plenty of warnings: -Wall -Wextra (older form: -Wall -W) or:
+#FFLAGS="$FFLAGS -Wconversion -Wimplicit-interface -Wunused-labels"
+if test "x$DEVEL" = x ; then #- no optimisation + IEEE :
+FOPTIM='-O0'
+else #- development/check options:
+FOPTIM='-O0 -g -fbounds-check'
+FOPTIM="$FOPTIM -ffpe-trap=invalid,zero,overflow -finit-real=inf"
+fi
+fi
+F90FLAGS=$FFLAGS
+F90OPTIM=$FOPTIM
+# --------------------------
+# NETCDF DIRECTORIES
+# --------------------------
+HDF5_HOME=/path/to/HDF5
+NETCDF_HOME=/path/to/NETCDF
+INCLUDEDIRS=''
+INCLUDES="-I$NETCDF_DIR/include -I$HDF5_DIR/include"
+LIBS="-L$NETCDF_DIR/lib -lnetcdff -lnetcdf -L$HDF5_DIR/lib -lhdf5_hl -lhdf5"
+# -----------------------
+# INCLUDE MPI DIRECTORIES
+# -----------------------
+MPI_HOME=$HMPI_PATH
+MPI_INC_DIR=$MPI_HOME/include
+INCLUDES="$INCLUDES -I$MPI_HOME/include"
+INCLUDEDIRS="$INCLUDEDIRS $MPI_HOME/include"
+MPIINCLUDEDIR="$MPI_INC_DIR"
-- 
Gitee


From 47fa644976b98e67115877fabedd7428e1f5ea9e Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 1 Aug 2024 16:10:59 +0800
Subject: [PATCH 33/34] add templates/MITGCM/c67o/data.MITGCM.arm.bs*

---
 templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config | 2 +-
 templates/MITGCM/c67o/data.MITGCM.arm.bs.cpu.config     | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config b/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config
index 071a351..911a7a1 100644
--- a/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config
+++ b/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config
@@ -13,7 +13,7 @@ module use /hpcrunner/software/moduledeps
 module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.1
 ./jarvis -install package/pnetcdf/1.12.3 bisheng+mpi
 module add bisheng4.0.0-hmpi2.4.1/pnetcdf/1.12.3
-./jarvis -install package/netcdf/4.7.0/clang/ bisheng+mpi
+./jarvis -install package/netcdf/4.7.4/clang/ bisheng+mpi
 module add bisheng4.0.0-hmpi2.4.1/netcdf-clang/4.7.4
 
 [ENV]
diff --git a/templates/MITGCM/c67o/data.MITGCM.arm.bs.cpu.config b/templates/MITGCM/c67o/data.MITGCM.arm.bs.cpu.config
index ddc3423..cfd98be 100644
--- a/templates/MITGCM/c67o/data.MITGCM.arm.bs.cpu.config
+++ b/templates/MITGCM/c67o/data.MITGCM.arm.bs.cpu.config
@@ -13,7 +13,7 @@ module use /hpcrunner/software/moduledeps
 module add bisheng4.0.0-hmpi2.4.1/hdf5-clang/1.10.1
 ./jarvis -install package/pnetcdf/1.12.3 bisheng+mpi
 module add bisheng4.0.0-hmpi2.4.1/pnetcdf/1.12.3
-./jarvis -install package/netcdf/4.7.0/clang/ bisheng+mpi
+./jarvis -install package/netcdf/4.7.4/clang/ bisheng+mpi
 module add bisheng4.0.0-hmpi2.4.1/netcdf-clang/4.7.4
 
 [ENV]
-- 
Gitee


From 53dd77d13997bd788b4b2824f32186c52a747a7c Mon Sep 17 00:00:00 2001
From: chenshaoheng <chenshaoheng3@h-partners.com>
Date: Thu, 1 Aug 2024 18:04:47 +0800
Subject: [PATCH 34/34] add templates/MITGCM/c67o/data.MITGCM.arm.bs*

---
 templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config b/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config
index 911a7a1..804c775 100644
--- a/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config
+++ b/templates/MITGCM/c67o/data.MITGCM.arm.bs-sve.cpu.config
@@ -38,7 +38,7 @@ case_dir =
 rm MITgcm -rf
 tar -xvf ${JARVIS_DOWNLOAD}/MITgcm_c67o.tar.gz
 cd MITgcm
-sed -i '13c CFLAGS='-O3 -Wno-implicit-int -Wno-implicit-function-declaration -Wno-incompatible-function-pointer-types -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true " ' ${JARVIS_ROOT}/templates/MITGCM/c67o/linux_arm64_gfortran
+sed -i '13c CFLAGS="-O3 -Wno-implicit-int -Wno-implicit-function-declaration -Wno-incompatible-function-pointer-types -mcpu=linxicore9100  -mllvm -force-customized-pipeline=true " ' ${JARVIS_ROOT}/templates/MITGCM/c67o/linux_arm64_gfortran
 cp ${JARVIS_ROOT}/templates/MITGCM/c67o/linux_arm64_gfortran tools/build_options
 rm verification/exp4/code/SIZE.h -f
 mv verification/exp4/code/SIZE.h_mpi verification/exp4/code/SIZE.h
-- 
Gitee