diff --git a/package/phyml/3.3/install.sh b/package/phyml/3.3/install.sh
new file mode 100755
index 0000000000000000000000000000000000000000..a57b2b69101ed5fbd6f2334ebac4c96cac92089d
--- /dev/null
+++ b/package/phyml/3.3/install.sh
@@ -0,0 +1,22 @@
+#!/bin/bash
+
+set -x
+set -e
+. ${DOWNLOAD_TOOL} -u https://github.com/stephaneguindon/phyml/archive/refs/tags/v3.3.20220408.tar.gz
+cd ${JARVIS_TMP}
+rm -rf phyml-3.3.20220408
+tar -xvf ${JARVIS_DOWNLOAD}/v3.3.20220408.tar.gz
+cd phyml-3.3.20220408
+sh autogen.sh
+./configure --prefix=$1 --enable-phyml-mpi
+
+HEADER_FILE="src/utilities.h"
+if grep -q '#elif defined(__ARM_NEON__) || defined(__ARM_NEON)' "$HEADER_FILE"; then
+    echo "NEON code already exists in $SOURCE_FILE. Skipping insertion."
+else
+    sed -i '43a \#elif defined(__ARM_NEON__) || defined(__ARM_NEON)\n#include <arm_neon.h>' "$HEADER_FILE"
+    sed -i '778a \#elif defined(__ARM_NEON__) || defined(__ARM_NEON)\nfloat64x2_t *_tPij1, *_tPij2, *_pmat1plk1, *_pmat2plk2, *_plk0, *_l_ev, *_r_ev, *_prod_left, *_prod_rght;' "$HEADER_FILE"
+fi
+
+make
+make install
diff --git a/templates/prottest/3.4.2/data.prottest.arm.cpu.config b/templates/prottest/3.4.2/data.prottest.arm.cpu.config
new file mode 100644
index 0000000000000000000000000000000000000000..07e92bb1cd0eb3eda5efdd31555a39e2773385f4
--- /dev/null
+++ b/templates/prottest/3.4.2/data.prottest.arm.cpu.config
@@ -0,0 +1,52 @@
+[SERVER]
+11.11.11.11
+
+[DOWNLOAD]
+prottest/3.4.2 https://github.com/ddarriba/prottest3/archive/refs/tags/3.4.2-release.tar.gz prottest3-3.4.2-release.tar.gz
+
+[DEPENDENCY]
+set -e
+set -x
+yum install -y ant
+module purge
+./jarvis -install hpckit/2024.12.30 com
+module use ./software/compiler/hpckit/2024.12.30/HPCKit/24.12.30/modulefiles
+module load bisheng/compiler4.1.0/bishengmodule
+module load bisheng/hmpi2.4.3/hmpi
+export CC=mpicc CXX=mpicxx FC=mpifort
+module use ./software/moduledeps/bisheng4.1.0-hmpi2.4.3
+./jarvis -install phyml/3.3 bisheng+mpi
+module load phyml/3.3
+
+rm -rf prottest3-3.4.2-release
+tar -xzvf ${JARVIS_DOWNLOAD}/prottest3-3.4.2-release.tar.gz
+
+[ENV]
+module purge
+module use ${JARVIS_ROOT}/software/compiler/hpckit/2024.12.30/HPCKit/24.12.30/modulefiles
+module load bisheng/compiler4.1.0/bishengmodule
+module use ${JARVIS_ROOT}/software/moduledeps/bisheng4.1.0-hmpi2.4.3
+module load phyml/3.3
+
+[APP]
+app_name = prottest
+build_dir = ${JARVIS_ROOT}/prottest3-3.4.2-release
+binary_dir = ${JARVIS_ROOT}/prottest3-3.4.2-release/dist
+case_dir = ${JARVIS_ROOT}/prottest3-3.4.2-release/dist
+
+[BUILD]
+ant jar
+cp ${PHYML_PATH}/bin/phyml-mpi dist/bin/
+
+[CLEAN]
+ant clean
+
+[RUN]
+run = sh runXProtTestHPC.sh
+binary = 
+nodes = 1
+
+[PERF]
+perf= 
+nsys=
+ncu=--target-processes all