From cde73eee566df2729f21048cc3b887cdad7b9292 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=E6=B1=82=E7=9F=A5=E8=B7=AF?= <528688838@qq.com>
Date: Thu, 20 Mar 2025 16:30:56 +0800
Subject: [PATCH] templates/bcftools

---
 .../1.10.2/data.bcftools.arm.cpu.config       | 74 +++++++++++++++++++
 .../data.bcftools.arm.cpu.hpckit.config       | 72 ++++++++++++++++++
 2 files changed, 146 insertions(+)
 create mode 100644 templates/bcftools/1.10.2/data.bcftools.arm.cpu.config
 create mode 100644 templates/bcftools/1.10.2/data.bcftools.arm.cpu.hpckit.config

diff --git a/templates/bcftools/1.10.2/data.bcftools.arm.cpu.config b/templates/bcftools/1.10.2/data.bcftools.arm.cpu.config
new file mode 100644
index 0000000..efb60eb
--- /dev/null
+++ b/templates/bcftools/1.10.2/data.bcftools.arm.cpu.config
@@ -0,0 +1,74 @@
+[SERVER]
+11.11.11.11
+
+
+[DOWNLOAD]
+bcftools/1.10.2 https://github.com/samtools/bcftools/releases/download/1.10.2/bcftools-1.10.2.tar.bz2
+
+
+[DEPENDENCY]
+set -e
+set -x
+module purge
+
+yum install zlib-devel bzip2 bzip2-devel xz-devel libcurl-devel -y
+
+./jarvis -install bisheng/4.1.0 com
+module use ./software/modulefiles
+module load bisheng/4.1.0
+export CC=`which clang`
+export CXX=`which clang++`
+export FC=`which flang`
+
+echo "Check the source code."
+if [ -d bcftools-1.10.2 ]; then
+	echo "The source code already exists, it will be deleted and re extracted."
+	rm -rf bcftools-1.10.2
+fi
+tar -jxvf ${JARVIS_DOWNLOAD}/bcftools-1.10.2.tar.bz2
+mkdir -p bcftools-1.10.2/Install
+
+
+[ENV]
+set -e
+set -x
+module purge
+module use software/modulefiles
+module load bisheng/4.1.0
+export CC=`which clang`
+export CXX=`which clang++`
+export FC=`which flang`
+
+
+[APP]
+app_name = bcftools
+build_dir = ${JARVIS_ROOT}/bcftools-1.10.2
+binary_dir = ${JARVIS_ROOT}/bcftools-1.10.2/Install/bin 
+case_dir = ${JARVIS_ROOT}/bcftools-1.10.2
+
+
+[BUILD]
+set -e
+set -x
+./configure --prefix=${JARVIS_ROOT}/bcftools-1.10.2/Install CFLAGS="-O3 -march=armv8.2-a"
+make -j
+make install
+
+
+[CLEAN]
+set -e
+set -x
+make clean
+
+
+[RUN]
+run = make test
+binary = 
+nodes = 1
+
+
+[PERF]
+perf=
+nsys=
+ncu=--target-processes all
+                            
diff --git a/templates/bcftools/1.10.2/data.bcftools.arm.cpu.hpckit.config b/templates/bcftools/1.10.2/data.bcftools.arm.cpu.hpckit.config
new file mode 100644
index 0000000..ffa13df
--- /dev/null
+++ b/templates/bcftools/1.10.2/data.bcftools.arm.cpu.hpckit.config
@@ -0,0 +1,72 @@
+[SERVER]
+11.11.11.11
+
+
+[DOWNLOAD]
+bcftools/1.10.2 https://github.com/samtools/bcftools/releases/download/1.10.2/bcftools-1.10.2.tar.bz2
+
+
+[DEPENDENCY]
+set -e
+set -x
+module purge
+
+yum install zlib-devel bzip2 bzip2-devel xz-devel libcurl-devel -y
+
+./jarvis -install hpckit/2024.12.30 any
+source software/utils/hpckit/2024.12.30/HPCKit/latest/setvars.sh --use-bisheng --force
+export CC=`which clang`
+export CXX=`which clang++`
+export FC=`which flang`
+
+echo "Check the source code."
+if [ -d bcftools-1.10.2 ]; then
+	echo "The source code already exists, it will be deleted and re extracted."
+	rm -rf bcftools-1.10.2
+fi
+tar -jxvf ${JARVIS_DOWNLOAD}/bcftools-1.10.2.tar.bz2
+mkdir -p bcftools-1.10.2/Install
+
+
+[ENV]
+set -e
+set -x
+module purge
+source software/utils/hpckit/2024.12.30/HPCKit/latest/setvars.sh --use-bisheng --force
+export CC=`which clang`
+export CXX=`which clang++`
+export FC=`which flang`
+
+
+[APP]
+app_name = bcftools
+build_dir = ${JARVIS_ROOT}/bcftools-1.10.2
+binary_dir = ${JARVIS_ROOT}/bcftools-1.10.2/Install/bin 
+case_dir = ${JARVIS_ROOT}/bcftools-1.10.2
+
+
+[BUILD]
+set -e
+set -x
+./configure --prefix=${JARVIS_ROOT}/bcftools-1.10.2/Install CFLAGS="-O3 -march=armv8.2-a"
+make -j
+make install
+
+
+[CLEAN]
+set -e
+set -x
+make clean
+
+
+[RUN]
+run = make test
+binary = 
+nodes = 1
+
+
+[PERF]
+perf=
+nsys=
+ncu=--target-processes all
+                            
-- 
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