diff --git a/package/bowtie2/2.4.1/install.sh b/package/bowtie2/2.4.1/install.sh
new file mode 100755
index 0000000000000000000000000000000000000000..7fe800037b27310ce8f80ba3d9d6de62b6337f0f
--- /dev/null
+++ b/package/bowtie2/2.4.1/install.sh
@@ -0,0 +1,19 @@
+#!/bin/bash
+set -x
+set -e
+. ${DOWNLOAD_TOOL} -u https://jaist.dl.sourceforge.net/project/bowtie-bio/bowtie2/2.4.1/bowtie2-2.4.1-source.zip
+. ${DOWNLOAD_TOOL} -u https://github.com/simd-everywhere/simde/archive/refs/heads/master.zip -f simde-master.zip
+. ${DOWNLOAD_TOOL} -u https://raw.githubusercontent.com/jratcliff63367/sse2neon/refs/heads/master/SSE2NEON.h
+cd ${JARVIS_TMP}
+rm -rf bowtie2-2.4.1
+unzip -q ${JARVIS_DOWNLOAD}/bowtie2-2.4.1-source.zip
+cd bowtie2-2.4.1
+mkdir -p third_party/simde/simde/x86
+export NO_TBB=1
+export POPCNT_CAPABILITY=0
+unzip -q ${JARVIS_DOWNLOAD}/simde-master.zip
+cp -a simde-master/simde third_party/simde/
+cp -a ${JARVIS_DOWNLOAD}/SSE2NEON.h third_party/simde/simde/x86/
+make all
+mkdir -p $1/bin
+cp bowtie2* $1/bin
diff --git a/templates/bowtie2/2.4.1/data.bowtie2.arm.cpu.config b/templates/bowtie2/2.4.1/data.bowtie2.arm.cpu.config
new file mode 100644
index 0000000000000000000000000000000000000000..621718b9918c9a342777197aebb2859b9e3ecd95
--- /dev/null
+++ b/templates/bowtie2/2.4.1/data.bowtie2.arm.cpu.config
@@ -0,0 +1,70 @@
+[SERVER]
+11.11.11.11
+
+[DOWNLOAD]
+case1 https://jaist.dl.sourceforge.net/project/bowtie-bio/bowtie2/2.4.1/bowtie2-2.4.1-source.zip
+case2 http://hgdownload.cse.ucsc.edu/goldenPath/mm10/bigZips/chromFa.tar.gz
+
+[DEPENDENCY]
+set -e 
+set -x
+module purge
+./jarvis -install package/hpckit/2024.12.30 any
+module use software/utils/hpckit/2024.12.30/HPCKit/latest/modulefiles
+module add bisheng/compiler4.1.0/bishengmodule
+
+[ENV]
+module purge
+module use software/utils/hpckit/2024.12.30/HPCKit/latest/modulefiles
+module add bisheng/compiler4.1.0/bishengmodule
+mkdir -p ${JARVIS_ROOT}/case
+
+[APP]
+app_name = bowtie2
+build_dir = ${JARVIS_ROOT}
+binary_dir = 
+case_dir = ${JARVIS_ROOT}/case
+
+[BUILD]
+./jarvis -install package/bowtie2/2.4.1 clang
+
+[RUN]
+run = 
+binary = 
+nodes = 1
+
+[BATCH]
+#定义日志文件
+LOG_FILE="bowtie2-performance.log"
+
+#清空日志文件
+> "$LOG_FILE"
+
+#执行命令并统计性能
+#待补充
+
+[JOB]
+#!/bin/sh
+#DSUB -n bowtie2_test
+#DSUB --mpi hmpi
+#DSUB -q default
+#DSUB -N 1
+#DSUB -R cpu =128
+#DSUB -oo bowtie2_$J.out
+#DSUB -eo bowtie2.$J.err
+
+module use software/moduledeps
+module add bisheng4.1.0/bowtie2/2.4.1
+ 
+#生成算例
+cd ${JARVIS_ROOT}/case
+if [ ! -f "mm10.fa" ];then
+ unzip -q ${JARVIS_DOWNLOAD}/bowtie2-2.4.1-source.zip
+ tar xf ${JARVIS_DOWNLOAD}/chromFa.tar.gz
+ cat *.fa > mm10.fa 
+fi
+
+#运行
+#待补充
+#bowtie2-build mm10.fa mm10
+#bowtie2 -p 6 -3 5 --local -x mm10 -1 bowtie2-2.4.1/example/reads/reads_1.fq -2 bowtie2-2.4.1/example/reads/reads_2.fq -S example.sam