From 71763f07abc02c5a4afad95a2310954ed7487174 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=E9=AB=98=E6=96=87=E5=B0=A7?= <18848977154@163.com>
Date: Fri, 16 May 2025 10:29:54 +0800
Subject: [PATCH 1/2] minimap2

---
 .../data.minimap2.arm.cpu.bisheng.config      | 47 +++++++++++++++++++
 1 file changed, 47 insertions(+)
 create mode 100644 templates/minimap2/master/data.minimap2.arm.cpu.bisheng.config

diff --git a/templates/minimap2/master/data.minimap2.arm.cpu.bisheng.config b/templates/minimap2/master/data.minimap2.arm.cpu.bisheng.config
new file mode 100644
index 0000000..3675ef7
--- /dev/null
+++ b/templates/minimap2/master/data.minimap2.arm.cpu.bisheng.config
@@ -0,0 +1,47 @@
+[SERVER]
+11.11.11.11
+
+[DOWNLOAD]
+minimap2/master https://github.com/lh3/minimap2/archive/master.zip minimap2-master.zip
+
+[DEPENDENCY]
+set -e
+set -x
+
+./jarvis -install hpckit/2024.12.30 any
+module use software/utils/hpckit/2024.12.30/HPCKit/24.12.30/modulefiles
+module purge
+module add bisheng/compiler4.1.0/bishengmodule
+yum install wget git gcc-c++ zlib -y
+unzip ${JARVIS_DOWNLOAD}/minimap2-master.zip
+
+[ENV]
+module use software/utils/hpckit/2024.12.30/HPCKit/24.12.30/modulefiles
+module purge
+module add bisheng/compiler4.1.0/bishengmodule
+yum install wget git gcc-c++ zlib -y
+
+[APP]
+app_name = minimap2
+build_dir = ${JARVIS_ROOT}/minimap2-master/
+binary_dir = ${JARVIS_ROOT}/minimap2-master/
+case_dir = ${JARVIS_ROOT}/minimap2-master/
+
+[BUILD]
+make arm_neon=1 aarch64=1
+./minimap2 --v
+
+
+[CLEAN]
+make clean
+
+[RUN]
+run = 
+binary = ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam
+nodes = 1
+
+[PERF]
+perf= 
+nsys=
+ncu=--target-processes all
+
-- 
Gitee


From 749382dc4322411651d2d9caf6eeee000433e184 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=E9=AB=98=E6=96=87=E5=B0=A7?= <18848977154@163.com>
Date: Fri, 16 May 2025 11:28:27 +0800
Subject: [PATCH 2/2] minimap2

---
 templates/minimap2/master/data.minimap2.arm.cpu.bisheng.config | 2 --
 1 file changed, 2 deletions(-)

diff --git a/templates/minimap2/master/data.minimap2.arm.cpu.bisheng.config b/templates/minimap2/master/data.minimap2.arm.cpu.bisheng.config
index 3675ef7..617f326 100644
--- a/templates/minimap2/master/data.minimap2.arm.cpu.bisheng.config
+++ b/templates/minimap2/master/data.minimap2.arm.cpu.bisheng.config
@@ -19,7 +19,6 @@ unzip ${JARVIS_DOWNLOAD}/minimap2-master.zip
 module use software/utils/hpckit/2024.12.30/HPCKit/24.12.30/modulefiles
 module purge
 module add bisheng/compiler4.1.0/bishengmodule
-yum install wget git gcc-c++ zlib -y
 
 [APP]
 app_name = minimap2
@@ -33,7 +32,6 @@ make arm_neon=1 aarch64=1
 
 
 [CLEAN]
-make clean
 
 [RUN]
 run = 
-- 
Gitee