From 2637e0b15be0983880500bac13fdb33e01270831 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=E9=AB=98=E6=96=87=E5=B0=A7?= <18848977154@163.com>
Date: Thu, 29 May 2025 17:28:35 +0800
Subject: [PATCH] circos

---
 .../circos/0.69-9/data.circos.arm.cpu.config  | 47 +++++++++++++++++++
 1 file changed, 47 insertions(+)
 create mode 100644 templates/circos/0.69-9/data.circos.arm.cpu.config

diff --git a/templates/circos/0.69-9/data.circos.arm.cpu.config b/templates/circos/0.69-9/data.circos.arm.cpu.config
new file mode 100644
index 0000000..59f353e
--- /dev/null
+++ b/templates/circos/0.69-9/data.circos.arm.cpu.config
@@ -0,0 +1,47 @@
+[SERVER]
+11.11.11.11
+
+[DOWNLOAD]
+circos/0.69-9 http://circos.ca/distribution/circos-0.69-9.tgz circos-0.69-9.tgz
+
+[DEPENDENCY]
+set -e
+
+module purge
+./jarvis -install package/anaconda3/2023.3 any
+source ${JARVIS_ROOT}/software/utils/anaconda3/2023.3/etc/profile.d/conda.sh
+tar -xzvf ${JARVIS_DOWNLOAD}/circos-0.69-9.tgz
+
+[ENV]
+module purge
+source ${JARVIS_ROOT}/software/utils/anaconda3/2023.3/etc/profile.d/conda.sh
+
+[APP]
+app_name = circos
+build_dir = ${JARVIS_ROOT}/circos-0.69-9/bin/
+binary_dir = ${JARVIS_ROOT}/circos-0.69-9/bin/
+case_dir = ${JARVIS_ROOT}/circos-0.69-9/example/
+
+[BUILD]
+conda create -n circos -y
+conda activate circos
+conda install -y conda-forge::perl
+conda install -y nanoporetech::perl-gd conda-forge::perl-clone bioconda::perl-config-general conda-forge::perl-svg dnachun::perl-list-moreutils nanoporetech::perl-params-validate bioconda::perl-readonly bioconda::perl-statistics-basic bioconda::perl-text-format
+cpan -i Math::Bezier Math::Round Font::TTF::Font Math::VecStat Regexp:Common Set::IntSpan
+./list.modules
+./test.modules
+./circos -modules
+
+[CLEAN]
+make clean
+
+[RUN]
+run = conda activate circos &&
+binary = circos -conf ./etc/circos.conf
+nodes = 1
+
+[PERF]
+perf=
+nsys=
+ncu=--target-processes all
+
-- 
Gitee