From 2637e0b15be0983880500bac13fdb33e01270831 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E9=AB=98=E6=96=87=E5=B0=A7?= <18848977154@163.com> Date: Thu, 29 May 2025 17:28:35 +0800 Subject: [PATCH] circos --- .../circos/0.69-9/data.circos.arm.cpu.config | 47 +++++++++++++++++++ 1 file changed, 47 insertions(+) create mode 100644 templates/circos/0.69-9/data.circos.arm.cpu.config diff --git a/templates/circos/0.69-9/data.circos.arm.cpu.config b/templates/circos/0.69-9/data.circos.arm.cpu.config new file mode 100644 index 0000000..59f353e --- /dev/null +++ b/templates/circos/0.69-9/data.circos.arm.cpu.config @@ -0,0 +1,47 @@ +[SERVER] +11.11.11.11 + +[DOWNLOAD] +circos/0.69-9 http://circos.ca/distribution/circos-0.69-9.tgz circos-0.69-9.tgz + +[DEPENDENCY] +set -e + +module purge +./jarvis -install package/anaconda3/2023.3 any +source ${JARVIS_ROOT}/software/utils/anaconda3/2023.3/etc/profile.d/conda.sh +tar -xzvf ${JARVIS_DOWNLOAD}/circos-0.69-9.tgz + +[ENV] +module purge +source ${JARVIS_ROOT}/software/utils/anaconda3/2023.3/etc/profile.d/conda.sh + +[APP] +app_name = circos +build_dir = ${JARVIS_ROOT}/circos-0.69-9/bin/ +binary_dir = ${JARVIS_ROOT}/circos-0.69-9/bin/ +case_dir = ${JARVIS_ROOT}/circos-0.69-9/example/ + +[BUILD] +conda create -n circos -y +conda activate circos +conda install -y conda-forge::perl +conda install -y nanoporetech::perl-gd conda-forge::perl-clone bioconda::perl-config-general conda-forge::perl-svg dnachun::perl-list-moreutils nanoporetech::perl-params-validate bioconda::perl-readonly bioconda::perl-statistics-basic bioconda::perl-text-format +cpan -i Math::Bezier Math::Round Font::TTF::Font Math::VecStat Regexp:Common Set::IntSpan +./list.modules +./test.modules +./circos -modules + +[CLEAN] +make clean + +[RUN] +run = conda activate circos && +binary = circos -conf ./etc/circos.conf +nodes = 1 + +[PERF] +perf= +nsys= +ncu=--target-processes all + -- Gitee