From 91438e7854172bd725a6586497aea77610b63c86 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=E9=AB=98=E6=96=87=E5=B0=A7?= <18848977154@163.com>
Date: Mon, 8 Dec 2025 20:15:07 +0800
Subject: [PATCH] relion

---
 .../3.1.2/data.relion.mini.all.arm.cpu.config | 27 ++++++++++---------
 .../data.relion.mini.all.sve.arm.cpu.config   | 27 ++++++++++---------
 .../data.relion.mini.altcpu.arm.cpu.config    | 27 ++++++++++---------
 .../3.1.2/data.relion.mini.arm.cpu.config     | 27 ++++++++++---------
 .../data.relion.mini.loop.arm.cpu.config      | 27 ++++++++++---------
 .../3.1.2/data.relion.mini.sve.arm.cpu.config | 27 ++++++++++---------
 6 files changed, 90 insertions(+), 72 deletions(-)

diff --git a/templates/relion/3.1.2/data.relion.mini.all.arm.cpu.config b/templates/relion/3.1.2/data.relion.mini.all.arm.cpu.config
index 89f3b750..917982dd 100644
--- a/templates/relion/3.1.2/data.relion.mini.all.arm.cpu.config
+++ b/templates/relion/3.1.2/data.relion.mini.all.arm.cpu.config
@@ -5,26 +5,28 @@
 relion/3.1.2 https://github.com/3dem/relion/archive/refs/tags/3.1.2.tar.gz relion-3.1.2.tar.gz 
 
 [DEPENDENCY]
-module use ./software/modulefiles
+yum install -y cmake
 module purge
-./jarvis -install bisheng/3.2.0-mini com
-module add bisheng/3.2.0-mini
+./jarvis -install hpckit/${HPCKIT_VERSION} any
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
 ./jarvis -install wxWidgets/3.0.5 clang
-module use ./software/moduledeps/bisheng3.2.0
-module add wxWidgets/3.0.5
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
 ./jarvis -install ctffind/4.1.14/clang clang
-./jarvis -install hmpi/2.3.0 clang
+module load ctffind-clang/4.1.14
 
 [ENV]
 module purge
-module use software/modulefiles
-module use software/moduledeps/bisheng3.2.0
-module add bisheng/3.2.0-mini
-module add wxWidgets/3.0.5
-module add ctffind-clang/4.1.14
-module add hmpi/2.3.0
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
+module load ctffind-clang/4.1.14
 
 [APP]
 app_name = relion
@@ -57,3 +59,4 @@ make install
 run = 
 binary = 
 nodes = 1
+
diff --git a/templates/relion/3.1.2/data.relion.mini.all.sve.arm.cpu.config b/templates/relion/3.1.2/data.relion.mini.all.sve.arm.cpu.config
index ed55a679..7e5cd816 100644
--- a/templates/relion/3.1.2/data.relion.mini.all.sve.arm.cpu.config
+++ b/templates/relion/3.1.2/data.relion.mini.all.sve.arm.cpu.config
@@ -5,26 +5,28 @@
 relion/3.1.2 https://github.com/3dem/relion/archive/refs/tags/3.1.2.tar.gz relion-3.1.2.tar.gz 
 
 [DEPENDENCY]
-module use ./software/modulefiles
+yum install -y cmake
 module purge
-./jarvis -install bisheng/3.2.0-mini com
-module add bisheng/3.2.0-mini
+./jarvis -install hpckit/${HPCKIT_VERSION} any
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
 ./jarvis -install wxWidgets/3.0.5 clang
-module use ./software/moduledeps/bisheng3.2.0
-module add wxWidgets/3.0.5
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
 ./jarvis -install ctffind/4.1.14/clang clang
-./jarvis -install hmpi/2.3.0 clang
+module load ctffind-clang/4.1.14
 
 [ENV]
 module purge
-module use software/modulefiles
-module use software/moduledeps/bisheng3.2.0
-module add bisheng/3.2.0-mini
-module add wxWidgets/3.0.5
-module add ctffind-clang/4.1.14
-module add hmpi/2.3.0
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
+module load ctffind-clang/4.1.14
 
 [APP]
 app_name = relion
@@ -53,3 +55,4 @@ make install
 run = 
 binary = 
 nodes = 1
+
diff --git a/templates/relion/3.1.2/data.relion.mini.altcpu.arm.cpu.config b/templates/relion/3.1.2/data.relion.mini.altcpu.arm.cpu.config
index 99d40da8..3b2c5b9f 100644
--- a/templates/relion/3.1.2/data.relion.mini.altcpu.arm.cpu.config
+++ b/templates/relion/3.1.2/data.relion.mini.altcpu.arm.cpu.config
@@ -5,26 +5,28 @@
 relion/3.1.2 https://github.com/3dem/relion/archive/refs/tags/3.1.2.tar.gz relion-3.1.2.tar.gz 
 
 [DEPENDENCY]
-module use ./software/modulefiles
+yum install -y cmake
 module purge
-./jarvis -install bisheng/3.2.0-mini com
-module add bisheng/3.2.0-mini
+./jarvis -install hpckit/${HPCKIT_VERSION} any
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
 ./jarvis -install wxWidgets/3.0.5 clang
-module use ./software/moduledeps/bisheng3.2.0
-module add wxWidgets/3.0.5
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
 ./jarvis -install ctffind/4.1.14/clang clang
-./jarvis -install hmpi/2.3.0 clang
+module load ctffind-clang/4.1.14
 
 [ENV]
 module purge
-module use software/modulefiles
-module use software/moduledeps/bisheng3.2.0
-module add bisheng/3.2.0-mini
-module add wxWidgets/3.0.5
-module add ctffind-clang/4.1.14
-module add hmpi/2.3.0
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
+module load ctffind-clang/4.1.14
 
 [APP]
 app_name = relion
@@ -57,3 +59,4 @@ make install
 run = 
 binary = 
 nodes = 1
+
diff --git a/templates/relion/3.1.2/data.relion.mini.arm.cpu.config b/templates/relion/3.1.2/data.relion.mini.arm.cpu.config
index f9b2bfcd..bf58d4d6 100644
--- a/templates/relion/3.1.2/data.relion.mini.arm.cpu.config
+++ b/templates/relion/3.1.2/data.relion.mini.arm.cpu.config
@@ -5,26 +5,28 @@
 relion/3.1.2 https://github.com/3dem/relion/archive/refs/tags/3.1.2.tar.gz relion-3.1.2.tar.gz 
 
 [DEPENDENCY]
-module use ./software/modulefiles
+yum install -y cmake
 module purge
-./jarvis -install bisheng/3.2.0-mini com
-module add bisheng/3.2.0-mini
+./jarvis -install hpckit/${HPCKIT_VERSION} any
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
 ./jarvis -install wxWidgets/3.0.5 clang
-module use ./software/moduledeps/bisheng3.2.0
-module add wxWidgets/3.0.5
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
 ./jarvis -install ctffind/4.1.14/clang clang
-./jarvis -install hmpi/2.3.0 clang
+module load ctffind-clang/4.1.14
 
 [ENV]
 module purge
-module use software/modulefiles
-module use software/moduledeps/bisheng3.2.0
-module add bisheng/3.2.0-mini
-module add wxWidgets/3.0.5
-module add ctffind-clang/4.1.14
-module add hmpi/2.3.0
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
+module load ctffind-clang/4.1.14
 
 [APP]
 app_name = relion
@@ -53,3 +55,4 @@ make install
 run = 
 binary = 
 nodes = 1
+
diff --git a/templates/relion/3.1.2/data.relion.mini.loop.arm.cpu.config b/templates/relion/3.1.2/data.relion.mini.loop.arm.cpu.config
index ad8a650f..02998ba0 100644
--- a/templates/relion/3.1.2/data.relion.mini.loop.arm.cpu.config
+++ b/templates/relion/3.1.2/data.relion.mini.loop.arm.cpu.config
@@ -5,26 +5,28 @@
 relion/3.1.2 https://github.com/3dem/relion/archive/refs/tags/3.1.2.tar.gz relion-3.1.2.tar.gz 
 
 [DEPENDENCY]
-module use ./software/modulefiles
+yum install -y cmake
 module purge
-./jarvis -install bisheng/3.2.0-mini com
-module add bisheng/3.2.0-mini
+./jarvis -install hpckit/${HPCKIT_VERSION} any
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
 ./jarvis -install wxWidgets/3.0.5 clang
-module use ./software/moduledeps/bisheng3.2.0
-module add wxWidgets/3.0.5
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
 ./jarvis -install ctffind/4.1.14/clang clang
-./jarvis -install hmpi/2.3.0 clang
+module load ctffind-clang/4.1.14
 
 [ENV]
 module purge
-module use software/modulefiles
-module use software/moduledeps/bisheng3.2.0
-module add bisheng/3.2.0-mini
-module add wxWidgets/3.0.5
-module add ctffind-clang/4.1.14
-module add hmpi/2.3.0
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
+module load ctffind-clang/4.1.14
 
 [APP]
 app_name = relion
@@ -58,3 +60,4 @@ make install
 run = 
 binary = 
 nodes = 1
+
diff --git a/templates/relion/3.1.2/data.relion.mini.sve.arm.cpu.config b/templates/relion/3.1.2/data.relion.mini.sve.arm.cpu.config
index 689593aa..51b9d59e 100644
--- a/templates/relion/3.1.2/data.relion.mini.sve.arm.cpu.config
+++ b/templates/relion/3.1.2/data.relion.mini.sve.arm.cpu.config
@@ -5,26 +5,28 @@
 relion/3.1.2 https://github.com/3dem/relion/archive/refs/tags/3.1.2.tar.gz relion-3.1.2.tar.gz 
 
 [DEPENDENCY]
-module use ./software/modulefiles
+yum install -y cmake
 module purge
-./jarvis -install bisheng/3.2.0-mini com
-module add bisheng/3.2.0-mini
+./jarvis -install hpckit/${HPCKIT_VERSION} any
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
 ./jarvis -install wxWidgets/3.0.5 clang
-module use ./software/moduledeps/bisheng3.2.0
-module add wxWidgets/3.0.5
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
 ./jarvis -install ctffind/4.1.14/clang clang
-./jarvis -install hmpi/2.3.0 clang
+module load ctffind-clang/4.1.14
 
 [ENV]
 module purge
-module use software/modulefiles
-module use software/moduledeps/bisheng3.2.0
-module add bisheng/3.2.0-mini
-module add wxWidgets/3.0.5
-module add ctffind-clang/4.1.14
-module add hmpi/2.3.0
+module use ./software/utils/hpckit/${HPCKIT_VERSION}/HPCKit/${HPCKIT_VERSION}/modulefiles
+module load bisheng/compiler${BISHENG_VERSION}/bishengmodule
+module load bisheng/hmpi${HPCKIT_VERSION}/release
 export CC=clang CXX=clang++ FC=flang
+module use ./software/moduledeps/bisheng${BISHENG_VERSION}
+module load wxWidgets/3.0.5
+module load ctffind-clang/4.1.14
 
 [APP]
 app_name = relion
@@ -52,3 +54,4 @@ make install
 run = 
 binary = 
 nodes = 1
+
-- 
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